Satmut-utils

Fixed bug in HGVS annotations for out-of-frame duplications > 1 nt.

Ensure HGVS annotations use uppercase bases to ensure compatibility with MAVEdb.

Fixed run_mave_hgvs_annot.py script to require target BED and fix bug in deletion-insertion MAVE-HGVS string.

Fixed bug in HGVS annotations for out-of-frame duplications > 1 nt.


Release Summary:

Fixed bugs in HGVS annotations for single in-frame insertions and MNPs spanning the CDS-3' UTR junction. Ensure deletion-insertion annotations follow HGVS proposal SVD-WG010. Added a script for post-processing *summary.txt files to adjust HGVS positions relative to target regions as opposed to a coding sequence.

Fixed bugs in HGVS annotations for single in-frame insertions and MNPs spanning the CDS-3' UTR junction. Ensure deletion-insertion annotations follow HGVS proposal SVD-WG010.

Fixed unintended reversion to 1.1.0-dev-multi logic for MNP calling.