Scib-metrics

Changed

- Refactor all relevant metrics to use `NeighborsResults` as input instead of sparse
distance/connectivity matrices {pr}`129`.

Fixed

- Fix KMeans. All previous versions had a bug with KMeans and ARI/NMI metrics are not reliable
with this clustering {pr}`115`.

Added

- Update isolated labels to use newest scib methodology {pr}`108`.

Fixed

- Fix jax one-hot error {pr}`107`.

Removed

- Drop Python 3.8 {pr}`107`.

Fixed

- Large scale tutorial now properly uses gpu index {pr}`92`

Changed

- Switch to Ruff for linting/formatting {pr}`87`
- Update cookiecutter template {pr}`88`

Changed

- Expose chunk size for silhouette {pr}`82`