Users:
- Protocols' help added.
- Help of the parameters was enhanced.
- New feature: patch tracking alignment added.
- Trimming options in fiducial model added
- The order of the parameters in the forms was slightly modified according to the user actions.
- Protocol CTF correction:
* Now it can deal with excluded views in the CTF and/or in the TS.
* The same when entering with interpolated or not aligned TS.
* The xf, defocus, and tlt files are generated inside each TS extra sub-directory.
Developers:
- Update the acquisition order in the CTFTomo objects (field added to that class in scipion-em-tomo v3.7.0).
- Refactorization: avoid the excessive usage of getFirstItem.
- File generation methods (most of them in utils) adapted to the CTF-TS intersection functionality.
- Fixing sorted dictionary in ctf correction. How to access the defocus list in utils.py