Screenpro2

What's Changed
* major reformatting and introduce alpha version of CLI in https://github.com/ArcInstitute/ScreenPro2/pull/44
* update `plotReplicateScatter` function in https://github.com/ArcInstitute/ScreenPro2/pull/46


**Full Changelog**: https://github.com/ArcInstitute/ScreenPro2/compare/v0.2.9...v0.2.10

What's Changed
* support cas12-screens – https://github.com/ArcInstitute/ScreenPro2/pull/40, #39
* improve `ngs` module
* enable processing fastq files from single, dual, or multiplexed Cas9 and Cas12 screens
* introduce `cas9` and `cas12` submodules


**Full Changelog**: https://github.com/ArcInstitute/ScreenPro2/compare/v0.2.8...v0.2.9

What's Changed
* Improve NGS module 38
* Support both single-guide and dual-guide library design 37
(i.e. V2 and V3 genome-scale dCas9 screen platforms)
* Write and improve test modules
* Improve doc and license files


**Full Changelog**: https://github.com/ArcInstitute/ScreenPro2/compare/v0.2.7...v0.2.8

* introduce `ngs` module to process fastq files and generate count matrix
* add missing features to support single-guide-design screens (i.e. V2 CRISPRi/a screens)

minor improvements
- public release on Arc's website https://arcinstitute.org/tools/screenpro2
- improve the conda environment and docker config files
- improve documentation
- split `phenoScore` and `phenoStats` modules

Features:
- Pipelines to perform screen processing analysis on `ScreenPro2` object
- Drug screen workflow
- Flow cytometry based screen workflow
- Support one CRISPR screen platforms
- CRISPRi-dual-sgRNA-screens

This is a tool under development and tutorials will be introduced in the next release. In the meantime, feel free to email abearab for any question: abeaarcinstitute.org