* package includes NucAmino binaries
* fixed subtyping
* parsing JSON output from NucAmino to address full-length pol issue
* writes temporary alignment file to screen for illegal characters
* separating alignment data by gene
* wrote detailed installation instructions
v.0.0.2
- ported HIV subtyping from HIVdb pipeline
- setup script sets user permissions for system installation to allow users to access downloaded resources
- moved `gui.py` to a separate branch as a work in progress
- extensive refactoring and application of PEP8 code style
- byte string conversion to accommodate Python 3.5
- moved FASTA parsing to `utils.py`
- fixes 44, 42