fixes to bugs in mapping rnas where fractions were miscalculated updated novel module to run with current versions of joblib, sklearn added training data files for novel model
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0.5.0
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fixes to work with python 3 properly snap now works updated to use mirbase release 22 mpl tk fix sphinx docs added can run novel predictions in parallel some fixes to precursor generation removed bedtools dependency
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0.4.0
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added test trf module for trna fragment counting differential expression improved output implemented separate limma and edgeR for de analysis
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0.3.0
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Added missing code for isomir counting Fix for problem with treating filenames as strings in python 2 when calling HTSeq Some changes to output for mirna counting Can run a basic test from cmd line Tested to work on OSX
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0.2.2
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Fixed missing isomir code Fix for filename types with HTSeq in python2 Some changes to output for mirna counting
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0.2.1
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Can do feature counting from command line Fixed to allow split counts for multi mappers Changes to novel report output Removed biopython dep Removed some mpl imports