Spatialde

Latest version: v1.1.3

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1.1.0

This release adds wrappers to use the SpatialDE methods with [AnnData](https://anndata.readthedocs.io/en/latest/) objects.

For the spatial significance test, it is used e.g. this way:

from SpatialDE.anndata import spatialde_test

results = spatialde_test(adata, coord_columns=['x', 'y'],
regress_formula='~np.log(total_counts)')


For automatic expression histology, it is used e.g. this way:

from SpatialDE.anndata import automatic_expression_histology

histology_results, patterns = \
automatic_expression_histology(adata, sres, C=8, l=1000.0,
coord_columns=['x', 'y'],
layer='residual',
verbosity=1)

1.0

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