Stranger

Latest version: v0.9.4

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0.9.4

Fixed
- Bug with no ref on multi-allele FORMAT decompose

0.9.3

Fixed
- Switch build system to uv-hatchling
- Version from importlib metadata

0.9.2

Fixed
- Use codecov badge and fix scout link on README page
- Added a test for TRGT MCs set to `.`
- Added CLI test for TRGT file
- Codecov upload hidden artifact issue
- Incorrect multisample, multiallele FORMAT output
- Write unannotated entries (not in definition file) to output (reverted to pre-0.9 behaviour)

0.9.1

Added
- Added github action test and release workflows
Fixed
- Docs for TRGT annotation
- Fallback setting allele size to 0 if MC is only set to "." and TRGT annotation requested

0.9.0

- Add Docker image
- Parse TRGT VCFs - in particular, decompose and parse FORMAT.MC
- Bring in updated loci references from raredisese reference-files
- Fix processing TRGT VCFs with missing MC and TRIDs without underscore [59](https://github.com/Clinical-Genomics/stranger/pull/59)
- Updates to pathogenic motifs for two loci: RFC1, RAPGEF2

0.8.1

Fix DAB1 pathologic repeat unit name
Update POLG coords, quite a bit on hg38

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