Taxmyphage

**Bug fix:** Updated code to recognise the correct sheet in the VMR record now sheet 1 not 0.

Automatically looks for a sheet naming containing "VMR" rather than the new index sheet in the VMR file provided by ICTV

**Update**:
- Speed increase by pre-calculation of similarity for all currently classified phages. Only similarity against the query genome have to be now computed. Option to use pre-calculated data or calculate all from scratch is available.

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.3.1...0.3.2

Bug:
- Modification of the blast command in case the similarity module is used. It will sort the blast results first in case similar sequences are in the input file and the reference (that would be the case if reference is not used as the input file will be the reference in that case)

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.3.0...0.3.1

Modification variables:
- Modification variable including Poor Mans to Clustering on Genomic Similarity or similarity depending on the context

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.2.9...0.3.0

Bug:
- Because some genome have the version at the end of the accession in the Bacteriophage.fasta file, the reduction of the VMR remove them from the VMR even if exists in the MASH database. So I removed the version number from the accession to be ablel to not remove them from the VMR. (See issue 14)

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.2.8...0.2.9

Improvement:
- Change the way the information are printed on the stdout
- Organised the Summary_file.txt to be more readable
- Added some functional test for some of the functions

**Full Changelog**: https://github.com/amillard/tax_myPHAGE/compare/0.2.7...0.2.8