Thera-py

Latest version: v0.4.0

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0.5.0dev3

What's Changed
* docs: fix env var name for harvard dataverse api key by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/400
* docs: fix click option for sources to update by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/402
* fix: handle brand name lookup KeyError by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/404


**Full Changelog**: https://github.com/cancervariants/therapy-normalization/compare/0.5.0-dev2...0.5.0-dev3

0.5.0dev2

What's Changed
* perf: improve disease caching by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/391
* chore: fix up logging by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/390
* feat!: refine schemas by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/392
* feat: sort everything by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/393
* feat!: remove search result formatting option by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/394
* feat: set silent to False in CLI by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/398
* docs: update hemonc instructions in readme by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/397


**Full Changelog**: https://github.com/cancervariants/therapy-normalization/compare/0.5.0-dev1...0.5.0-dev2

0.5.0dev1

What's Changed
* docs: add paper citation by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/382
* fix: handle hemonc deprecated concept by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/384
* test: suppress noisy boto logs by default by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/386
* feat: implement latest data updates by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/385
* style: fix ruff settings by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/388
* feat!: use wags-tails for data management by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/389
* feat!: use abstract interface for DB by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/378


**Full Changelog**: https://github.com/cancervariants/therapy-normalization/compare/0.5.0-dev0...0.5.0-dev1

0.5.0dev0

What's Changed
* test: Add test for DiseaseIndicationBase by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/342
* build(deps): resolve ipython and starlette vulnerabilities by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/347
* fix: expand wikidata SPARQL query by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/353
* build: remove requirements.txt files by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/358
* style: resolve mypy errors by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/369
* cicd: update release.yml (publish python distribution to pypi) by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/367
* chore: remove unused makefile by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/372
* feat!: use vrs 2.0-alpha models in /normalize by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/364
* cicd: add python3.11 to python-version matrix by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/373
* cicd: add Ruff linting and formatting by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/376
* build: use pyproject.toml for build configuration by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/377
* style: remove unnecessary noqa: E501 by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/381
* build: fix package name in pyproject.toml by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/380


**Full Changelog**: https://github.com/cancervariants/therapy-normalization/compare/v0.4.0...0.5.0-dev0

0.4.0

Not secure
What's Changed
* feat: add manual data extraction override rules by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/300
* ci: resolve GH Actions warnings by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/301
* fix(rxnorm): remove NOCODE IDs by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/298
* fix: correct rules filename by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/302
* refactor!: changes to help with serverless (staging) by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/307
* fix(gtop): handle guide to pharmacology data updates by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/308
* docs: add license by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/321
* ci: initial overhaul of tests by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/317
* fix: remove script tags from gtop therapy names by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/324
* refactor: remove unused ID prefixes by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/320
* feat: use new RxNorm download method by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/319
* refactor: remove unused classes/imports by jsstevenson in https://github.com/cancervariants/therapy-normalization/pull/318
* fix: pypi package should include all files in etl/ (staging) by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/337
* build: update disease normalizer to >=0.3.1 by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/338


**Full Changelog**: https://github.com/cancervariants/therapy-normalization/compare/v0.4.dev0...v0.4.0

0.4.dev0

Not secure
What's Changed
* refactor: use therapeutic descriptor from gagh.vrsatile.pydantic by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/288
* refactor: thereapeutic_id --> therapeutic, disease_id --> disease by korikuzma in https://github.com/cancervariants/therapy-normalization/pull/289


**Full Changelog**: https://github.com/cancervariants/therapy-normalization/compare/v0.3.6...v0.4.dev0

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