Minor changes: - fixed setup (pip install) problems caused by updates to Python3.12 - added comments about installing Transit2 in Python3.12 to install documentation
1.1.6
Transit:
Minor changes: - added new flags pathway_enrichment (like --focusLFC and --minLFC) - updated docs for these flags - also add link to pathways.html page to download association files
1.1.5
Transit:
Minor changes: - ensure that font file is included in PyPi package
1.1.4
Transit:
Minor changes: - fixed a bug in TrackView that was caused by deprecated function in recent version of Python Image Library (PIL v10.0)
1.1.3
Transit:
Minor changes: - allow wig file pathnames to have spaces in combined_wig and metadata files (e.g. for ANOVA and ZINB) - changed default alg for BWA from 'mem' back to 'aln' (see documentation on TPP)