- Fix for min-length filtering with paired samples. Previously required only one read to be longer, fix requires both.
- Fix tests for fastqtagcount to use indexed BAM files.
- Support gzipped cellular barcode files.
- Support 10x V2 barcoding scheme. Thanks to tomasgomes for the fix.
- Re-enable streaming for cellular barcode filtering.
- Add `--umi_matrix` option to fasttagcount. This outputs a non-umi-deduped matrix of counts, useful for QC.
- Support gzipped files for `sb_filter`, `mb_filter` and `add_uid`.