Unassigner

Minor upgrades and an improved database file handling system. All db files are now created in `~/.unassigner/` by default. The `--db_dir` option can set this to a non-default location. The `--type_strain_fasta` option is still available to override this but is deprecated.

What's Changed
* Upgrade docs for commands by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/35
* Replace pairwise2 with PairwiseAligner by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/37
* Put all db files in .unassigner/ by default by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/40


**Full Changelog**: https://github.com/PennChopMicrobiomeProgram/unassigner/compare/1.0.2...1.1.0

Properly bump version in package in line with release. See 1.0.1 for changelog.

**Full Changelog**: https://github.com/PennChopMicrobiomeProgram/unassigner/compare/1.0.1...1.0.2

Minor update to address non-critical code quality issues and upgrade the `parse_results` function to handle `NA` values (which unassigner produces sometimes in its results).

What's Changed
* Use `fmt` controllers for test_align.py linting by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/29
* Upgrade parse_results to handle NAs by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/31
* 32 address code quality issues in codacy report by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/33


**Full Changelog**: https://github.com/PennChopMicrobiomeProgram/unassigner/compare/1.0.0...1.0.1

What's Changed
* Update LTP to 08_2023 by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/24
* Prep 1.0.0 release by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/27


**Full Changelog**: https://github.com/PennChopMicrobiomeProgram/unassigner/compare/0.0.5...1.0.0

What's Changed
* Update LTP to 08_2023 by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/24
* Prep 1.0.0 release by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/27


**Full Changelog**: https://github.com/PennChopMicrobiomeProgram/unassigner/compare/0.0.5...1.0.0.dev2

What's Changed
* Update LTP to 08_2023 by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/24
* Prep 1.0.0 release by Ulthran in https://github.com/PennChopMicrobiomeProgram/unassigner/pull/27


**Full Changelog**: https://github.com/PennChopMicrobiomeProgram/unassigner/compare/0.0.5...1.0.0.dev1