Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.10.13, pytest-8.0.1, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
=============================== warnings summary ===============================
src/v2_samplesheet_maker/classes/samplesheet.py:10
/home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker/src/v2_samplesheet_maker/classes/samplesheet.py:10: DeprecationWarning:
Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
(to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
but was not found to be installed on your system.
If this would cause problems for you,
please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
import pandas as pd
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.10.13-final-0 ----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 141 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 10 0 100%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 16 16 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 14 14 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 30 6 80%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 25 3 88%
src/v2_samplesheet_maker/utils/cli.py 52 3 94%
src/v2_samplesheet_maker/utils/docopt_docs.py 4 4 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
--------------------------------------------------------------------------------------
TOTAL 691 155 78%
======================== 29 passed, 1 warning in 0.89s =========================