Variantworks

Latest version: v0.0.0

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0.1.0rc1

Introducing VariantWorks SDK - python framework to simplify the development of deep learning powered variant and consensus calling from reads.

**Highlights of first cut**

1. *_Encoder_* - Read pileup encoder with support for read, base quality, mapping quality data, and reference and allele proposal encodings.
2. *_I/O_* - VCF reader for parsing true and false positive variant samples for training.
3. *_Data Loader_* - NeMo wrapped data loader implementations for online and offline data loading/encoding.
4. *_Samples_* - A trainer/evaluator app for simple SNP zygosity calling using a CNN.

More details available at https://clara-parabricks.github.io/VariantWorks/

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