Vfind

Changes

- Remove `skip_alignment` keyword argument in favor of setting `accept_*_alignment`
to 1.

Bug Fixes

- fix issue where only first stream in multi-gz fastq files were being processed
(3)

Improvements

- Updated docs

Features

- Added `skip_alignment` to optionally skip semi-global alignment and only
use exact adapter matches to find variants.
- `find_variants` now has visual feedback for progress since jobs are
usually long. To turn this off, set `show_progress` to `False`.

Bug Fixes

- DNA translation assumed coding sequences and would fail for sequences not
divisible by 3. Non-coding sequences are skipped by default.
To include non-coding sequences, set `skip_translation` to `False` to get
all DNA sequences that are recovered before translation.

Misc.

- Support x86_64 linux

Initial release.

Features

- Find variants flanked by constant adapter sequences in gzipped FASTQ files.