Westpa

Bug fixes for **WESTPA 2.0** (v2022.XX).

See previous release notes for the new features in WESTPA 2.0.

What's Changed
* Python 3.8 is no longer supported (https://github.com/westpa/westpa/pull/449)
* Added Numpy 2 and Python 3.13 Support (https://github.com/westpa/westpa/pull/450, https://github.com/westpa/westpa/pull/442)
* Fix MAB 86 Reporting by jeremyleung521 in https://github.com/westpa/westpa/pull/435
* remove w_fluxanl deprecation warning by jeremyleung521 in https://github.com/westpa/westpa/pull/443
* Fixing the MAB skip function in 2+ dimensions. by HScheiber in https://github.com/westpa/westpa/pull/436
* Allow WESS and WEED to detect when a simulation has been truncated by gma57 in https://github.com/westpa/westpa/pull/452
* Fix w_init when using hdf5 framework with processes work manager by jeremyleung521 in https://github.com/westpa/westpa/pull/457
* Misc. backend update/cleanups (Sphinx, CI, tests)


**Full Changelog**: https://github.com/westpa/westpa/compare/v2022.11...v2022.12

sha256 checksum:

westpa-2022.12.zip
ba8bd0e71a9b757f4ca830d9c1a676ae9823e4839c037b094b7e7a9df852abb8

westpa-2022.12.tar.gz
c5b77bf9ee0c046d50665aa739d29b4a16176b320e8742ed39dc90870e3f8ca0

Bug fixes for **WESTPA 2.0** (v2022.XX).

See previous release notes for the new features in WESTPA 2.0.

What's Changed
* Support Matplotlib 3.9
* w_truncate will no longer take -n > max current iteration; w_truncate without `-n` will delete the last iteration
* Bugfix for when west.executable.dataset is defined in west.cfg but empty
* Misc. backend update/cleanups (Sphinx, CI, tests)

**Full Changelog**: https://github.com/westpa/westpa/compare/v2022.10...v2022.11

sha256 checksum:

westpa-2022.11.zip
ed310174a8af9649f8310c4398989d9031442652acb0cc7619d05693093f2a03

westpa-2022.11.tar.gz
fb9984634c9c937b3b0c98bb36cd6febdbea0344fae5ff83d6028e3938634137

Bug fixes for **WESTPA 2.0** (v2022.XX).

See previous release notes for the new features in WESTPA 2.0.

What's Changed
* Support MDTraj v1.10.0
* Wheels for Python 3.12

**Full Changelog**: https://github.com/westpa/westpa/compare/v2022.09...v2022.10

sha256 checksum:

westpa-2022.10.zip
168d1e64d0509fdb3589cb137e116575978c05e187c03c940f9b93365f692141

westpa-2022.10.tar.gz
8d9f627c9d7fbdd62c2ba952c00c27e3bcee7c97c7a91476f1fe6c4b27926a38

Bug fixes for **WESTPA 2.0** (v2022.XX).

See release notes for `v2022.01` for the new features in WESTPA 2.0.

What's Changed
* MacOS Wheels now available for both x86-64 (Intel) and arm64 (Apple Silicon) (402, 405)
* Data manager should now process deprecated numpy dtypes (like `int` vs `np.int`) (399)
* MAB Lite/ direction: 86: An MAB option to not put leading/trailing walkers into separate bins (403)
* A fallback mode where users can specify executable config under westpa.data.datasets (408)
* Custom binning can be passed to msm_we through haMSM restarting Plugin (382)
* west.cfg will now accept more formats for max_run_wallclock (413)
* w_pdist will now take care of negative max values (414)
* Debug Mode now works for w_ipa (401)
* Segfault that occasionally occur during process work manager shutdown is fixed (412)
* Errors fixed when multiple callbacks/multiple plugins are used simultaneously (410)
* NaturalNameWarning from HDF5 Framework is now suppressed (416)
* westpa.analysis summary tables will now display properly (418)
* ``w_states --replace`` will report properly (421 )
* Other backend/README updates.

**Full Changelog**: https://github.com/westpa/westpa/compare/v2022.08...v2022.09

sha256 checksum:

westpa-2022.09.zip
fd038ec4eb64987d24f93631d5e7a87e37ebe0628a867917915d27173c6ae6df

westpa-2022.09.tar.gz
66211eb7686f9b485d0f89a2b35a39e6538623e46113edc84dfbf2e55353070f

Bug fixes for **WESTPA 2.0** (v2022.XX).

See release notes for `v2022.01` for the new features in WESTPA 2.0.

What's Changed
* w_succ will now respect the `-W` argument
* Hot fix for unintended error during initialization (`w_init`)
* Fix where the wrong loader is chosen for HDF5 Framework if you have another aux dataset


**Full Changelog**: https://github.com/westpa/westpa/compare/v2022.07...v2022.08

sha256 checksum:

westpa-2022.08.zip
37f97d7880ff0184dfefc4acb81f1a14164809c107368c2438fe3c444511cb68

westpa-2022.08.tar.gz
40fcb7d16747eb6c55cbba56b3167bae849dc4192d8cce754b055012519f2a1a

Bug fixes for **WESTPA 2.0** (v2022.XX).

See release notes for `v2022.01` for the new features in WESTPA 2.0.

What's Changed
* WESTPA will require `numpy < 2`. We plan to allow numpy>=2 in `v2022.08` once the we've reasonably vetted.
* Bug fixes and QOL improvements for `w_multi_west`
* Bug fixes for `w_states` (edge cases where the order the bins are added affects the bin label output)
* Bug fixe for nested YAMLConfigs
* QOL Improvements for tstate files (allow empty lines and comments)
* Better Error Messages (segment numbers included in pcoord length error, errors marked as HDF5 Framework related)
* Better GitHub Forms
* More Tests for ibstates


**Full Changelog**: https://github.com/westpa/westpa/compare/v2022.06...v2022.07

sha256 checksum:

westpa-2022.07.zip
6973e19842631639a68956a6a853393cb138f76f9b3637d1084d751f20f2e750

westpa-2022.07.tar.gz
8f25f1256269ea74b55d409b9979e846aa29f699b8752bc554a1d10f9ecb6bbb