Wonambi

Latest version: v7.15

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7.13

- **7.12**: tukey from scipy.signal.windows and nan instead of NaN for numpy
- **7.11**: quick fix for Phillips staging import

7.10

7.09

- **7.08**: import staging from Phillips CSV
- **7.07**: import staging from Phillips CSV
- **7.06**: use focal for travis CI
- **7.05**: actually update setuptools
- **7.04**: upgrade setuptools
- **7.03**: fix for spindle detection with custom bands, io updates
- **7.02**: event import support from RemLogic FR version

7.01

Version 6
----------
- **6.17**: major fix for event rejection
- **6.16**: restore __init__.py (sorry)
- **6.15**: frequency and timefrequency can handle NaN when using spectrogram
- **6.14**: BIDS, Staresina2015 slow wave detector, staging import improvements
- **6.13**: Ignore error when reading micromed TRC containing a non-standard montage
- **6.12**: Ngo2015 slow wave detection; FOOOF 1.0 update; PRANA events import
- **6.11**: create trials based on events for trial-based analysis
- **6.10**: improvements to morlet analysis
- **6.09**: bugfixes for data reading and staging import
- **6.08**: convert data to new format (EDF, Brainvision, audio...) and other improvements and fixes
- **6.07**: fix BCI2000 reading function (thanks to Schmetzler)
- **6.06**: fix float for some spindle detections
- **6.05**: backward compatibility for channels file
- **6.04**: fix duration for dataset markers in GUI
- **6.03**: added notch and demean to GUI
- **6.02**: correct offset for openephys events
- **6.01**: move all the test files in one location

Version 5
----------
- **5.73**: handle multiple videos for micromed
- **5.72**: openephys; resampling by a fraction for display; fixes for remlogic staging import
- **5.71**: fixes for spindle detectors: Moelle2011, Ferrarelli2007, Wamsley2012, Lacourse2018
- **5.70**: remlogic staging import fix
- **5.69**: changes to sleep statistics; buffer option in fetch
- **5.68**: fixes for event import and Lacourse2018 spindle detector
- **5.67**: remlogic event import
- **5.66**: fixes for spindle detection. NOTE: spindle detection no longer merges across channels by default
- **5.65**: fix for event writing
- **5.64**: much faster event detection; spindle detection tweaks (Ferrarelli, Moelle, Martin)
- **5.63**: tweaks for filters in Ferrarelli, Moelle and Martin spindle detectors
- **5.62**: RemLogic import upgrade; fix for sleep fragmentation
- **5.61**: HRVanalysis RRI import; DeltaMed staging import; fixes for staging import, epoch selection
- **5.60**: online reference available as '_REF'
- **5.59**: fill in epochs before staging start on import
- **5.58**: bugfix for edf
- **5.57**: allows for EDF with a negative physical range and digital range (warning instead of error)
- **5.56**: sleep statistics by cycle bugfix
- **5.55**: sleep statistics bugfix
- **5.54**: sleep stats by cycle
- **5.53**: export annotations to BIDS; lacourse normalization option
- **5.52**: tolerance parameter, fixes for spindle detection
- **5.51**: Martin2013 and Lacourse2018 fixes
- **5.50**: event scoring agreement stats; median and log in Welch's method
- **5.49**: event consensus; Brain Vision and BIDS export fixes
- **5.48**: Martin2013 spindle detection; fixes for Ray2015 and Lacourse2018
- **5.47**: revamped spindle dialog; spindle detection fixes
- **5.46**: Lacourse2018 spindle detection; fix for reading events
- **5.45**: change event's type in GUI
- **5.44**: channel-specific artefact event marking and rejection
- **5.43**: bugfix for SW tests
- **5.42**: default SW detection is negative-then-positive (up-then-down); sleep stats fixes
- **5.41**: improved sleep statistics
- **5.40**: bci2000 bug fix
- **5.39**: bci2000 sampling frequency can end with Hz
- **5.38**: bci2000 sampling frequency can end with Hz
- **5.37**: rename event type; detrending for detections; fixes for event merger, band power, cycles
- **5.36**: fix for PRANA import
- **5.35**: export RemLogic FR
- **5.34**: import PRANA staging
- **5.33**: min duration criterion applied after concatenation in fetch
- **5.32**: faster Hilbert transform
- **5.31**: bugfix
- **5.30**: fix for band power
- **5.29**: event parameter export from script
- **5.28**: bugfix
- **5.27**: improvements for event deletion
- **5.26**: bugfixes; min event display duration
- **5.25**: bugfixes for event selection, marker naviagation
- **5.24**: event export dialog
- **5.23**: improved event navigation
- **5.22**: frequency and timefrequency should keep attributes
- **5.21**: import and export bids
- **5.20**: fixes for cycles, ferrarelli spindle detection, EDF handling
- **5.19**: support to read eeglab files
- **5.18**: bugfix for event data export
- **5.17**: fixes for event parameter export
- **5.16**: add notch filter
- **5.15**: keep marker names when converting to events
- **5.14**: fixes for Brain Vision, event selection in console
- **5.13**: export events to Brain Vision
- **5.12**: band-limited power; overlapping epochs in console
- **5.11**: read openephys continuous data
- **5.10**: poi on overview; import signal quality; bugfixes
- **5.09**: read and write brainvision eeg, vhdr, vmrk
- **5.08**: Ray2015 spindle detection
- **5.07**: Parametrization of power spectra (fooof); FASST spindle detection
- **5.06**: slow wave detection fixes
- **5.05**: faster data fetching in detections; improved filters in spindle detection; new and improved Ferrarelli2007 detection
- **5.04**: changed Moelle2011 default freqs
- **5.03**: Moelle2011 spindle detection now uses 'luebeck' filter from article
- **5.02**: bugfixes
- **5.01**: Analysis Console

Version 4
----------
- **4.27**: hotfix: spindle frequency
- **4.26**: console bugfixes, almost ready; removed evt analysis dialog
- **4.25**: fix export svg
- **4.24**: analysis console event export fix; ferrarelli2007 removed for now
- **4.23**: export traces or overview to svg
- **4.22**: improved sleep stats
- **4.21**: sometimes detected events can be None
- **4.20**: handle weird / unrecognized sleep stages and mark them as unknown
- **4.19**: improved micromed reader
- **4.18**: full documentation for sleep statistics
- **4.17**: correct way to get timestamps for lights out and lights on
- **4.16**: Enter relative or absolute time for lights out and on
- **4.15**: improvements and fixes to detections; dataset export to edf and import from text
- **4.14**: SW detection fixes
- **4.13**: cycle option in detections; spindle detection fixes; sleep stats export
- **4.12**: bugfix as before
- **4.11**: bugfix of gui when pressing left and right button together
- **4.10**: clear error messages and fix reading mff
- **4.09**: improvements on analysis dialog. EDF reading more robust
- **4.08**: fixed event deletion; improved i/o
- **4.07**: updates and fixes for spindle detection
- **4.06**: new spindle method; fix for Nir2011; epoch selection ; bugfixes
- **4.05**: save and load montage when filtering is set to 0 (None)
- **4.04**: use variable epoch length for scoring, better handling of ABF2 files
- **4.03**: change nan to zero so we can at least plot something if there are missing data
- **4.02**: you can open a dataset from the command line (and better logging)
- **4.01**: frequency analysis is much more consistent and correct

Version 3
----------
- **3.11**: fixed event marking; stage now visible when zoomed in <30s
- **3.08**: list where the settings are stored
- **3.07**: docs and tests for notes, analysis; some minor fixes
- **3.06**: use time placeholder when abf files have empty time info
- **3.05**: go to epoch gets input from user
- **3.04**: support for axon abf file format
- **3.03**: SW detection; import sleep scores for Alice, Compumedics, Domino, RemLogic, Sandman; merge events; bugfixes
- **3.02**: bugfix when opening montage
- **3.01**: merged with sleepytimes, including pretty GUI for spindle / SW detection

Version 2
----------
- **2.06**: import FASST sleep scores
- **2.05**: full coverage of plot3 and detect
- **2.04**: disable buttons in channels widget (+tests/docs)
- **2.03**: use markers for channels 3d plots
- **2.02**: new vispy surface for Viz3
- **2.01**: use setup_wonambi.py for booking, it works in appveyor

Version 1
----------
- **1.02**: test with vispy (using pip instead of conda)
- **1.01**: improved EDF reader (multiple frequencies and annotations)
- **1.00**: phypno / sleepytimes -> wonambi

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