Zodiaq

Various errors would occur when no matches were found. We added fixes so empty dataframes would be returned in those instances.

Settings for protein quantification available at the command line were added to the GUI.

- a decoy peptide generation method was implemented, broadening the scope of library file formats.

zoDIAq rewritten from the ground up with unit tests, system tests, and enhanced modularization for future development.

- extends peptide + protein quantification
- identifies proteins that are common across the input files