Cg-lims

calculate RB volumes (102) (minor)

Added

New EPP to calculate RB volumes. This EPP is used in the Master Step , button Calculate RB Volume in the workflow WGS PCR free v5

Replaces the script https://github.com/Clinical-Genomics/clinical_EPPs/blob/master/EPPs/calc_vol.py

calculate RNA water and sample volumes (109) (minor)

* calculate RNA water and sample volumes

* add cli command

* unit tests

* coveralls version

* breakpoint...

* H20 -> H2O

* implement feedback

validateor for collection_date (105)(patch)

Added
- validator for colleciton date

fix wrong types (101)(patch)

Fixed
- fixed wrong step types

Step Models and Arnold load CLI (96)


Added
- CLI to load arnold preps with prep-type as option
`arnold-upload prep --prep-type <wgs/mic/cov/twist> `
- A BaseStep model which all steps in a prep will inherit from
- Step specific models for all steps of interest in the four preps wgs, micro, covid, and twist. These models inherit the BaseStep
- one test per pret, covering all steps in the prep

Changed
- The prepare_fixture.py script, to prepare container and containertypes.
- BaseAnalyte
- Adding a base_fields function returning wanted artifact fields that are not UDFs
- Removing the filter functions of UDFs, and instead just returning udfs as dicts. The Modelling happens outside the scope of the BaseAnalyte instead.

fixing arnold sample model (99)(patch)

Changed
- added cg requiered fields in arnold sample model