Mite-schema

Changed

- Reaction: made "description" of reaction examples optional for backward compatibility
- Made DOI pattern matching less stringent

Changed

- Changelog: flattened structure, changed identifiers to ORCID, changed versioning to major alone (before 'major.minor')
- Evidence: flattened structure to a single object (before: a list of objects)
- Reaction database IDs: flattened structure, changed formatting of EC to the code (e.g. 1.2.3.4) alone (before: string had to start with 'EC'), drop MITE crosslinks
- References: removed non-peristing reference types, only DOI allowed (before: url, pubmed, patent)
- Tailoring reaction terms: removed 'FADH2 supply for chlorination' since it is not tailoring per se
- Status: removed 'embargoed' specification

Changed

- CLI: added support for multiple input files checking at once

Added

- CLI: returns exit code 0 when file passes, returns 1 if file does not pass

Changed

- schema/entry: removed "quality" flag due to lack of objectiveness (all MITE entries were set to medium; difficult to define quality objectively)
- schema/reactions: removed "isBalanced" flag since this information is already contained in the reaction SMARTS/SMILES
- schema/reactions: removed "isIterative" flag: was not used by any entry so far, reaction SMARTS can be applied

Changed

- schema/reactions: 'databaseIds' accepts now arrays of strings (before: a single string, see also v1.1). This allows to e.g. specify multiple MITE cross-references instead of a single one.

Changed

- Made minimum Python version more permissive