Research-town

What's Changed

reorganize the database part and fully support the collection of research benchmark

* fix(deps): bump uvicorn from 0.31.0 to 0.31.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/764
* fix(deps): bump litellm from 1.48.19 to 1.49.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/763
* fix(deps): bump numpy from 1.26.4 to 2.1.2 by dependabot in https://github.com/ulab-uiuc/research-town/pull/762
* feat(env): update input api for env by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/761
* fix(deps): bump litellm from 1.49.0 to 1.49.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/767
* fix(deps): bump fastapi from 0.115.0 to 0.115.2 by dependabot in https://github.com/ulab-uiuc/research-town/pull/771
* fix(deps): bump uvicorn from 0.31.1 to 0.32.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/774
* fix(deps): bump litellm from 1.49.1 to 1.49.4 by dependabot in https://github.com/ulab-uiuc/research-town/pull/773
* fix(deps): bump starlette from 0.38.6 to 0.40.0 in the pip group by dependabot in https://github.com/ulab-uiuc/research-town/pull/772
* chore(deps-dev): bump mypy from 1.11.2 to 1.12.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/770
* chore(deps-dev): bump types-setuptools from 75.1.0.20240917 to 75.1.0.20241014 by dependabot in https://github.com/ulab-uiuc/research-town/pull/768
* chore(deps): bump the npm_and_yarn group across 1 directory with 2 updates by dependabot in https://github.com/ulab-uiuc/research-town/pull/766
* fix(deps): bump the npm_and_yarn group in /docs with 2 updates by dependabot in https://github.com/ulab-uiuc/research-town/pull/765
* fix(deps): bump litellm from 1.49.4 to 1.49.5 by dependabot in https://github.com/ulab-uiuc/research-town/pull/776
* fix(deps): bump litellm from 1.49.5 to 1.50.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/788
* chore(deps-dev): bump types-setuptools from 75.1.0.20241014 to 75.2.0.20241019 by dependabot in https://github.com/ulab-uiuc/research-town/pull/787
* chore(deps-dev): bump mypy from 1.12.0 to 1.12.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/786
* chore(deps-dev): bump ruff from 0.6.9 to 0.7.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/777
* chore(deps-dev): bump types-requests from 2.32.0.20240914 to 2.32.0.20241016 by dependabot in https://github.com/ulab-uiuc/research-town/pull/775
* fix(deps): bump mdx-js/react from 3.0.1 to 3.1.0 in /docs by dependabot in https://github.com/ulab-uiuc/research-town/pull/781
* feat(backend): refactored backend for singleton db instance by shreypandey in https://github.com/ulab-uiuc/research-town/pull/785
* feat(bench): add benchmark evaluation script by Kunlun-Zhu in https://github.com/ulab-uiuc/research-town/pull/754
* feat(bench): add more evaluation setting by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/790
* fix(profile): fix pub_abstracts type error by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/792
* fix(bench): delete unnecessary parts in prompting by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/793
* feat(bench): support bench cache as a decorator by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/795
* chore(deps-dev): bump mypy from 1.12.1 to 1.13.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/796
* feat(bench): move most operation during dataset creation scripts by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/797
* fix(bench): change names of citation intros to contents by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/800
* fix(deps): bump http-proxy-middleware from 2.0.6 to 2.0.7 in /docs in the npm_and_yarn group by dependabot in https://github.com/ulab-uiuc/research-town/pull/798
* chore(deps): bump http-proxy-middleware from 2.0.6 to 2.0.7 in /frontend in the npm_and_yarn group across 1 directory by dependabot in https://github.com/ulab-uiuc/research-town/pull/799
* fix(bench): minor fix on mlbench by keyangds in https://github.com/ulab-uiuc/research-town/pull/801
* feat(bench): support collect mlbench from NIPS by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/802
* feat(bench): update collection of mini-mlbench by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/803
* fix(bench): fix arxiv id process when eval by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/804
* fix(bench, collection): delete overlapped arxiv links by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/805
* fix(deps): bump litellm from 1.50.2 to 1.50.4 by dependabot in https://github.com/ulab-uiuc/research-town/pull/808
* chore(deps-dev): bump ruff from 0.7.0 to 0.7.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/807
* fix(deps): bump transformers from 4.45.2 to 4.46.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/806
* chore(deps-dev): bump types-setuptools from 75.2.0.20241019 to 75.2.0.20241025 by dependabot in https://github.com/ulab-uiuc/research-town/pull/809
* feat(eval): support embedding metric by Kunlun-Zhu in https://github.com/ulab-uiuc/research-town/pull/810
* feat(db): refactor db to support redis by shreypandey in https://github.com/ulab-uiuc/research-town/pull/783
* feat(bench): add ICLR benchmark by keyangds in https://github.com/ulab-uiuc/research-town/pull/811
* fix(deps): bump fastapi from 0.115.3 to 0.115.4 by dependabot in https://github.com/ulab-uiuc/research-town/pull/813
* fix(deps): bump tqdm from 4.66.5 to 4.66.6 by dependabot in https://github.com/ulab-uiuc/research-town/pull/812
* fix(deps): bump litellm from 1.51.0 to 1.51.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/817
* fix(deps): bump torch from 2.5.0+cpu to 2.5.1+cpu by dependabot in https://github.com/ulab-uiuc/research-town/pull/816
* chore(deps-dev): bump pytest-cov from 5.0.0 to 6.0.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/815
* fix(deps): bump transformers from 4.46.0 to 4.46.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/814
* fix(deps): bump litellm from 1.51.1 to 1.51.2 by dependabot in https://github.com/ulab-uiuc/research-town/pull/818
* feat(bench): support using semantic scholar to build profile by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/822
* fix(bench): fix the overlapped name and error in profile generation by keyangds in https://github.com/ulab-uiuc/research-town/pull/827
* fix(bench): avoid unnecessary error handling by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/831
* feat(bench): make script multi-processing by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/832
* fix(deps): bump litellm from 1.51.2 to 1.51.3 by dependabot in https://github.com/ulab-uiuc/research-town/pull/833
* fix(bench): fix database saving mode by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/834
* fix(bench): update parallel saving part by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/835
* fix(bench): add number limit for semantic scholar search by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/836
* feat(poetry): support v0.0.2 by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/837

New Contributors
* shreypandey made their first contribution in https://github.com/ulab-uiuc/research-town/pull/785

**Full Changelog**: https://github.com/ulab-uiuc/research-town/compare/v0.0.1...v0.0.2

What's Changed
* feat(config, mapper): improve proposal writing by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/731
* fix(workflow): update git & environment settings before deployment by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/733
* fix(workflow): update conda loading by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/736
* fix(deps): bump litellm from 1.48.6 to 1.48.7 by dependabot in https://github.com/ulab-uiuc/research-town/pull/737
* fix(collector): fix pdf parsing error catch by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/741
* feat(backend): support monitoring active task by keyangds in https://github.com/ulab-uiuc/research-town/pull/738
* fix(test): fix pytest error for pull_profiles by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/742
* feat(bench): add research bench creation script by Kunlun-Zhu in https://github.com/ulab-uiuc/research-town/pull/744
* fix(bench): rewrite bench functions by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/748
* feat(log): support logging prompt by keyangds in https://github.com/ulab-uiuc/research-town/pull/747
* feat(env): support environment without rag by keyangds in https://github.com/ulab-uiuc/research-town/pull/753
* feat(env): support multi-proposal by sampling idea by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/752
* fix(agent): change discuss idea to summarize idea by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/755
* fix(agent,env): delete prompt pk and change env paper search num by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/756
* fix(poetry): prepare release v0.0.1 by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/757


**Full Changelog**: https://github.com/ulab-uiuc/research-town/compare/v0.0.1b3...v0.0.1

What's Changed
* fix(deps): bump uvicorn from 0.30.6 to 0.31.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/688
* fix(deps): bump litellm from 1.48.2 to 1.48.3 by dependabot in https://github.com/ulab-uiuc/research-town/pull/687
* bug(utils): fix bug in get paper intro by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/693
* feat(config): delete domain as param by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/694
* feat(workflow): automate fullstack deployment by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/697
* feat(workflow): update deploy workflow by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/698
* feat(profile): support agent sampling by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/696
* fix(prompt): make insight and idea shorter by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/700
* chore(config): delete together ai default value and delete result path by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/701
* feat(frontend): add more instruction on UI by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/705
* feat(workflow): update frontend deploy workflow by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/707
* fix(workflow): update backend url by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/712
* feat(dbs): support search paper by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/713
* fix(test): support arxiv client mocking in env test by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/716
* feat(frontend): dynamically show what the system is doing by timsanders256 in https://github.com/ulab-uiuc/research-town/pull/717
* feat(utils): support arxiv retry by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/718
* chore(gitignore): add gitignore for research bench by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/720
* fix(frontend): rebuttal results shows not correctly by keyangds in https://github.com/ulab-uiuc/research-town/pull/722
* feat(doc): update readme by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/724
* fix(frontend): support showing idea after discussion by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/728
* fix(prompt): fix prompt for better inference performance by timsanders256 in https://github.com/ulab-uiuc/research-town/pull/725
* feat(poetry): prepare beta3 by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/729

New Contributors
* keyangds made their first contribution in https://github.com/ulab-uiuc/research-town/pull/722

**Full Changelog**: https://github.com/ulab-uiuc/research-town/compare/v0.0.1b2...v0.0.1b3

What's Changed
* fix(deps): bump pydantic from 2.9.1 to 2.9.2 by dependabot in https://github.com/ulab-uiuc/research-town/pull/625
* fix(deps): bump fastapi from 0.114.2 to 0.115.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/626
* fix(deps): bump litellm from 1.46.1 to 1.46.6 by dependabot in https://github.com/ulab-uiuc/research-town/pull/629
* chore(deps-dev): bump ruff from 0.6.5 to 0.6.6 by dependabot in https://github.com/ulab-uiuc/research-town/pull/635
* fix(deps): bump litellm from 1.46.6 to 1.46.8 by dependabot in https://github.com/ulab-uiuc/research-town/pull/634
* fix(deps): bump pandas from 2.2.2 to 2.2.3 by dependabot in https://github.com/ulab-uiuc/research-town/pull/633
* feat(frontend): design user interface by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/627
* chore(deps): bump the npm_and_yarn group across 1 directory with 2 updates by dependabot in https://github.com/ulab-uiuc/research-town/pull/639
* feat(docs): update api reference documentation by Kunlun-Zhu in https://github.com/ulab-uiuc/research-town/pull/636
* feat(prompt): polish prompt by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/640
* chore(deps-dev): bump ruff from 0.6.6 to 0.6.7 by dependabot in https://github.com/ulab-uiuc/research-town/pull/646
* fix(deps): bump litellm from 1.46.8 to 1.47.2 by dependabot in https://github.com/ulab-uiuc/research-town/pull/645
* feat(frontend): support show agent name by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/648
* fix(frontend): fix agent name unchanged bug by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/650
* fix(frontend): show error when entering invalid link by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/653
* feat(workflow): add pypi publish yaml by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/654
* fix(deps): bump litellm from 1.47.2 to 1.48.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/656
* feat(deps): update dependency by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/655
* feat(config): rebuild config and split yaml by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/657
* fix(poetry): change torch to cpu version by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/659
* feat(db): avoid retriever loading when init db by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/661
* feat(db): change match api for paper and profile db by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/662
* fix(deps): bump litellm from 1.48.0 to 1.48.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/667
* fix(deps): bump transformers from 4.44.2 to 4.45.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/665
* feat(poetry): polish poetry by unifying format by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/668
* feat(release): change package name from research_town to research-town by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/669
* fix(prompt): make peer review prompts shorter by timsanders256 in https://github.com/ulab-uiuc/research-town/pull/664
* fix(deps): bump litellm from 1.48.1 to 1.48.2 by dependabot in https://github.com/ulab-uiuc/research-town/pull/675
* fix(deps): bump transformers from 4.45.0 to 4.45.1 by dependabot in https://github.com/ulab-uiuc/research-town/pull/674
* chore(deps): bump rollup from 2.79.1 to 2.79.2 in /frontend in the npm_and_yarn group across 1 directory by dependabot in https://github.com/ulab-uiuc/research-town/pull/677
* chore(deps-dev): bump ruff from 0.6.7 to 0.6.8 by dependabot in https://github.com/ulab-uiuc/research-town/pull/672
* fix(deps): bump beartype from 0.18.5 to 0.19.0 by dependabot in https://github.com/ulab-uiuc/research-town/pull/673
* chore(utils): rename agent collector by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/676
* feat(prompt): update strategic prompting for 5q by Kunlun-Zhu in https://github.com/ulab-uiuc/research-town/pull/678
* feat(utils): support parse pdf file based on url by Kunlun-Zhu in https://github.com/ulab-uiuc/research-town/pull/671
* feat(profile): support extract domain for each agent by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/679
* feat(backend): update backend code by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/680
* fix(frontend): modify icon and title by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/681
* feat(prompt): add few-shot example for proposal gen and modify eval prompt by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/682
* feat(data): support 5q format in rebuttal by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/683
* feature(frontend): polish user interface by chengzr01 in https://github.com/ulab-uiuc/research-town/pull/684
* chore(poetry): update version number for beta-2 by lwaekfjlk in https://github.com/ulab-uiuc/research-town/pull/685


**Full Changelog**: https://github.com/ulab-uiuc/research-town/compare/v0.0.1b1...v0.0.1b2

Support most functions in research town.