Sonnia

Description

SoNNia is a Python 3 software developed to infer selection pressures on features of amino acid CDR3 sequences. SoNNia takes as input TCR CDR3 amino acid sequences with V and J genes. Its output is sequence-level selection factors which indicate how more or less represented this sequence would be in the selected pool as compared to the pre-selected pool. These in turn could be used to calculate the probability of observing any sequence after selection and sample from the selected repertoire.

Resources

• PyPi

• 0.3.1
• 0.3.0
• 0.2.5
• 0.2.4
• 0.2.3
• 0.2.2
• 0.2.1
• 0.2.0
• 0.1.5
• 0.1.4
• 0.1.3
• 0.1.2
• 0.1.1
• 0.1.0
• 0.0.9
• 0.0.8
• 0.0.7
• 0.0.6
• 0.0.5
• 0.0.4