Xeofs

Feature

* Serialization methods ([103](https://github.com/nicrie/xeofs/issues/103)) ([`69df4d9`](https://github.com/nicrie/xeofs/commit/69df4d9378197935793fc2863f3ffa6a716af49b))
* Inverse transform for unseen data ([102](https://github.com/nicrie/xeofs/issues/102)) ([`4974844`](https://github.com/nicrie/xeofs/commit/4974844bbd5fcfb16806f0d393505d4b93805140))
* Inverse_transform scores arg ([`7c1dc16`](https://github.com/nicrie/xeofs/commit/7c1dc16515f3c7588324eba53be9327ca8b4e8c2))

Breaking

* inverse transform for unseen data ([102](https://github.com/nicrie/xeofs/issues/102)) ([`4974844`](https://github.com/nicrie/xeofs/commit/4974844bbd5fcfb16806f0d393505d4b93805140))
* inverse_transform scores arg ([`7c1dc16`](https://github.com/nicrie/xeofs/commit/7c1dc16515f3c7588324eba53be9327ca8b4e8c2))

Documentation

* Update authors and description ([100](https://github.com/nicrie/xeofs/issues/100)) ([`49c4367`](https://github.com/nicrie/xeofs/commit/49c4367b145a84ef4cdbd71f51ef34a63accc654))
* Update authors and description ([`3e39eda`](https://github.com/nicrie/xeofs/commit/3e39edaa22e9e28ff2140a414af9d1fb82194d67))

Fix

* Reindexing transformed scores ([`a8e458e`](https://github.com/nicrie/xeofs/commit/a8e458e21a5b30c323b93263ff6e7dd687cb391c))

Documentation

* Add performance tests ([`42d8e75`](https://github.com/nicrie/xeofs/commit/42d8e752de7d052a4f7e2b83eb17a534f1d3789c))

Performance

* **Decomposer:** Compute by default ([`1f3b214`](https://github.com/nicrie/xeofs/commit/1f3b2146574d56c0724fd194433037ee08428264))
* **Dask:** Avoid double computation ([`f24cb09`](https://github.com/nicrie/xeofs/commit/f24cb09c30d91bd1c2b7405cfdbbfd74a3ead5eb))

Fix

* Parameter to show dask progress bar ([`3482fa4`](https://github.com/nicrie/xeofs/commit/3482fa465da66a8e540d10e3a13ef3b8c1461e70))
* **Bootstrapper:** Correct scaling of PCs ([`ed59dd9`](https://github.com/nicrie/xeofs/commit/ed59dd9a6b66ae878c1eb596a2fa9fb9b0e137ca))

Documentation

* Fix link ([`c6a595b`](https://github.com/nicrie/xeofs/commit/c6a595b2d03855b8267992b7f2b345fb1578fe15))
* Minor tweaks in documentation ([`977a89e`](https://github.com/nicrie/xeofs/commit/977a89e99b74d7629a6478356ffc458ea1c0359f))
* Build with Python 3.11 ([`c181972`](https://github.com/nicrie/xeofs/commit/c181972253d9e6bc3ddcfd945f14bc1f06d7ef5f))
* Complete overhaul ([`47e13ea`](https://github.com/nicrie/xeofs/commit/47e13ea6d0972f67b3e362473380ec802598e409))
* Add CoC ([`70f10b2`](https://github.com/nicrie/xeofs/commit/70f10b29e3ac22b49bb3de0f00992761c1e6a059))
* Update doc environment ([94](https://github.com/nicrie/xeofs/issues/94)) ([`9592dbc`](https://github.com/nicrie/xeofs/commit/9592dbcab5b59236b60ce5c82fa2f374e4dc5bec))
* Update env ([`e8f72d5`](https://github.com/nicrie/xeofs/commit/e8f72d5cc97393a806a276ff8932103392435b33))
* Repair gallery ([`fa647d8`](https://github.com/nicrie/xeofs/commit/fa647d8a0420e2938cea885956bb26a5376cfdaf))
* Update examples ([93](https://github.com/nicrie/xeofs/issues/93)) ([`9f3c0c1`](https://github.com/nicrie/xeofs/commit/9f3c0c15a3e6df57adeabdbc213928a524795fe9))
* Update some docstrings ([`2795c54`](https://github.com/nicrie/xeofs/commit/2795c54951b47ff0e124566338d5dfa0f8a15b91))
* Fix reference hyperlinks ([`38cadb9`](https://github.com/nicrie/xeofs/commit/38cadb9aa970640f02734457fb07e5e43212facf))
* Fix up minor errors ([`ef3fe8a`](https://github.com/nicrie/xeofs/commit/ef3fe8aa2f707377efdd444b136c29acc592a418))
* Fix broken example ([`ecc114e`](https://github.com/nicrie/xeofs/commit/ecc114e789ec3711cab6c53d42cf9b67035d3c06))
* Fix broken example ([`b58d985`](https://github.com/nicrie/xeofs/commit/b58d9857b15a599063f99578e8f8d481b77fce9b))

Feature

* Provide standard kwarg for random_state ([`cf8b641`](https://github.com/nicrie/xeofs/commit/cf8b641fffa92892fb7168b0e20dcdd7275cc736))
* Add Extended EOF Analysis ([`2db736c`](https://github.com/nicrie/xeofs/commit/2db736cdc5b860c36dbc23c43ffa04251e813533))
* Parameter normalized scores ([`f0dcb34`](https://github.com/nicrie/xeofs/commit/f0dcb3411f36d8aac29a7b781556afd31a36a6b6))
* Add GWPCA support ([`58c2dbe`](https://github.com/nicrie/xeofs/commit/58c2dbedea9e72f62a80e11415338aa2862e778b))
* Add CCA support ([`79e82cc`](https://github.com/nicrie/xeofs/commit/79e82ccb0802079123d3254c0ef9a617a962fb90))
* Choose name of sample and feature dim ([`4d521f8`](https://github.com/nicrie/xeofs/commit/4d521f83dea46c558202fc9ce9cfe35c5126453c))

Fix

* **CCA:** Add checks for edge cases ([`76c0b1b`](https://github.com/nicrie/xeofs/commit/76c0b1bbe7f64d16b340ae10789f3df3234321b0))
* Streamline model attribute types ([`98c5cef`](https://github.com/nicrie/xeofs/commit/98c5cef82e542daa7cf7f003c52666bbedba994b))
* **GWPCA:** Raise error in scores ([`43e9274`](https://github.com/nicrie/xeofs/commit/43e9274a3eb270a6e331e2f73f77a785e3eb6654))
* **Bootstrapper:** Avoid pertubating sample coords ([`ffd11fc`](https://github.com/nicrie/xeofs/commit/ffd11fcf21041b7defba6adb9973807d39678678))
* Score coordinates in T-mode EOF analysis ([`731eec2`](https://github.com/nicrie/xeofs/commit/731eec2825dbe091634cf41a52f38187cce3109c))
* PCA preprocessing before Hilbert transform ([`2bbcb69`](https://github.com/nicrie/xeofs/commit/2bbcb6929ab92d051623c1b15f7ae0eb2f5eebac))

Documentation

* Provide top-level type hints ([`6be8923`](https://github.com/nicrie/xeofs/commit/6be892354a208a95d7fe56ebbd3ca90ec86dc31b))

Performance

* **dask:** Compute SVD result immediately ([`807b7e8`](https://github.com/nicrie/xeofs/commit/807b7e896990c4cfb788478644e7647ab3a9ffa1))

Feature

* Add Optimal Persistence Analysis (OPA) ([`2482110`](https://github.com/nicrie/xeofs/commit/248211086e140b5f0d8ec40a40962ed4b56a7b94))
* Add Canonical Correlation Analysis ([`782e624`](https://github.com/nicrie/xeofs/commit/782e6242ac1f0dd34ed12ee3d0e8154c66551d83))
* **MCA:** Provide optional PCA preprocessing ([`100f40d`](https://github.com/nicrie/xeofs/commit/100f40d7d2f5d9c59725948f4a642a511c4b347f))
* Choose the SVD solver ([`50c2386`](https://github.com/nicrie/xeofs/commit/50c23864dd0eb3cd18a4113edd87980622f31da9))

Documentation

* More instructive quickstart ([75](https://github.com/nicrie/xeofs/issues/75)) ([`58c2f09`](https://github.com/nicrie/xeofs/commit/58c2f09e3e7e57c4d2457445634d125b13c6fda8))
* Correct typo in README ([`3b88d5e`](https://github.com/nicrie/xeofs/commit/3b88d5e1b28249efc0cbe5f9c86586eedb6273fb))
* Add quickstart example and point to methods ([`f741199`](https://github.com/nicrie/xeofs/commit/f7411991f29370703560e605578db76b850a2ebc))
* Update location of Action workflow for badge ([`650a8c8`](https://github.com/nicrie/xeofs/commit/650a8c8e2ae1738a89e308bf79d3a2c5dd4b7250))
* Update location of Action workflow for badge ([`878c5f5`](https://github.com/nicrie/xeofs/commit/878c5f58e36e7a87b88800fbcd7229bdec7c0b5a))
* Update badges ([`51113e4`](https://github.com/nicrie/xeofs/commit/51113e4acebfe954b93b8bd79a07c9f2f7a1284a))
* Add Black badge to README ([`759b011`](https://github.com/nicrie/xeofs/commit/759b01101da8bbd8e39327d49d24574137fc6bed))

Fix

* **ListStacker:** Use DA Stacker to unstack scores ([`c6479cf`](https://github.com/nicrie/xeofs/commit/c6479cfb2601d966f58348149667775c5d467063))
* MCA covariance (fraction) ([`3e4558d`](https://github.com/nicrie/xeofs/commit/3e4558d361fa115aea81a20cf17c4e2b62f03389))
* Remove **kwargs from BaseModel classes ([`555d0db`](https://github.com/nicrie/xeofs/commit/555d0db92ebf0e855e27364a8494168fc8bab622))
* Inverse_transform enforces real output ([`5e97160`](https://github.com/nicrie/xeofs/commit/5e971606781e71e81ee7e90af26a994e73d33781))
* Add missing conj for PCA inverse transform ([`e9d6fe1`](https://github.com/nicrie/xeofs/commit/e9d6fe10795317f719062c2dacb21c2d2e9d3af5))
* Transform of rotator classes ([`3368ed0`](https://github.com/nicrie/xeofs/commit/3368ed067d6b87ac8ccfb555c2e1f8da41d77fb0))
* Weigh modes with norm before reconstructing ([`13f42e0`](https://github.com/nicrie/xeofs/commit/13f42e07d4e2765bc1a88421258a1ea1872c6434))

Documentation

* Remove interactivity ([`6e99b8e`](https://github.com/nicrie/xeofs/commit/6e99b8e62831da4eee752e0d2ee0ee48c429f3c3))
* Add mamba to RTD config ([`33d040b`](https://github.com/nicrie/xeofs/commit/33d040b4a01ee2f55b510e4f0fc02eafa3c48019))
* Use mamba to create doc env ([`610facf`](https://github.com/nicrie/xeofs/commit/610facfd01b7d7ca277a38119fb60b91a43c8439))
* Add a Project description to conf.py ([`0a5cfe3`](https://github.com/nicrie/xeofs/commit/0a5cfe3c40bf02ae86de8fcef71de553a5ed1406))
* Improve documentation ([`ea32e7e`](https://github.com/nicrie/xeofs/commit/ea32e7ed5dcff5531c6bdaac18a47b6725e7f105))
* Extend and streamline doc strings of methods ([`a70b9d0`](https://github.com/nicrie/xeofs/commit/a70b9d04e9ce58fd0bdc7ef74540134c383fea7f))
* **bootstrapper:** Update to new design pattern ([`d61525b`](https://github.com/nicrie/xeofs/commit/d61525bff6681c30236111b443af4c39bbbc8a98))
* Update changelog ([`ace7ac9`](https://github.com/nicrie/xeofs/commit/ace7ac9ad101c64c7b041f48d4b3629b4bd747f7))
* Add ipython to env to use syntax highlight ([`6b2d16b`](https://github.com/nicrie/xeofs/commit/6b2d16b496abfdca4c69e6af556fdeca78227d63))

Performance

* Use xarray built-in method for variance ([`23af4d8`](https://github.com/nicrie/xeofs/commit/23af4d8384d01cfd4ef7098b3ccd22ad8d89612b))