------------- * The following *cell-density* sub-commands can now optionally take a ``--group-ids-config-path``: *cell-density*, *glia-cell-densities*, *inhibitory-and-excitatory-neuron-densities*, *fit-average-densities*
Otherwise they use the default config for the AIBS atlas.
0.2.0
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NSETM-2196 - Update atlas-density creation to be more universal * Update the probability map to support regions * Simplify the create-from-probability-map API * Compute densities in parallel * Support multiple probability maps * Add output metadata
0.1.4
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Density placement: Force scaling on voxels that are not full. Fix 27. (28)
split_into_halves existed in atlas_commons; remove the copy here (26)
Restrict ISH slice positions that are inside the volume_mask volume. (25)
0.1.3
------------- Add excitatory split
0.1.2
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Excitatory split (19) * Write SSCX layer-specific types to all isocortex * Changed layer key in csv file, changed layer filter in metadata to make it specific for Isocortex layers, changed code to do isocortex instead of just SSCX * made it isocortex specific * Used code snippet from Dimitri to read in metadata and create layers