Atlas-densities

Latest version: v0.2.6

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0.2.6

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* Updating regression requirements, teach
`atlas-densities cell-densities fit-average-densities` to have `--min-data-points` (81)

0.2.5

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* Fix nans in compute_region_volumes (80)

0.2.4

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* Add r_square values to the results of the fitting. (68)
* Add check to the region filter in case the input dataset is all equal to 0 for the region of interest. (74)
* Fix fitting and optimization steps (75)
* Faster _compute_region_cell_counts (72)
* Cleanup app tests (78)
* Faster compute average intensities (73)
* Speedup mtype density creation from probability maps using voxcell's ValueToIndexVoxels (79)

0.2.3

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* remove pkg_resources, use importlib (62)
* Drop literature values from regions that are not in hierarchy or not in the annotation volume (61)

0.2.2

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* add ``atlas-densities combination manipulate``

0.2.1

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* The following *cell-density* sub-commands can now optionally take a ``--group-ids-config-path``:
*cell-density*, *glia-cell-densities*, *inhibitory-and-excitatory-neuron-densities*, *fit-average-densities*

Otherwise they use the default config for the AIBS atlas.

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