Biomero

Latest version: v1.8.0

Safety actively analyzes 625051 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 1 of 5

1.8.0

- Cleanup after conversion too
- Don't copy metadata from original images anymore (it copied datatype too)


**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.7.1...v1.8.0

1.7.1

Fix bugs:
- Slurm job now stops complaining about missing Singularity
- CANCELLED+ state of job array is now handled properly (if you cancel a job array...)
- Cleanup now also removes the large amount of converter logs made by the job array
- Reduced DEBUG logging of imported modules from OMERO and Paramiko
- Fixed a printing bug in the minimal slurm script
- Turned more BIOMERO-scripts print statements into logger statements

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.7.0...v1.7.1

1.7.0

Finetuning!

- Added an Azure deployment for both BIOMERO and SLURM, go see the new tutorial!
- Made the init script async, because we cannot wait in OMERO for all the container images to download on SLURM. That does not scale.
- Split up a few of the init methods into their own methods so you could run them seperately
- Added a new script to check the 'progress' of available workflows on SLURM, called 'SLURM_check_setup'.
- Will probably rename the 'init' category to 'admin' if we keep adding more scripts that are not for end-users but for OMERO admins.

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.6.0...v1.7.0

1.6.0

- Moved file conversion into its own job in BIOMERO, so now added this is an intermediate step in Run_Workflow.py. This fixes a possible deadlock if you have more 'parent' jobs than nodes on your cluster.

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.5.0...v1.6.0

1.5.1

Perhaps just align biomero / biomero-scripts with minor versions in the future, not patch versions.
But for now, i'll just release both.

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.4.0...v1.5.1

1.5.0

- (DEBUG) Unified logging from all scripts by default to biomero.log
- Update batch script to be up to date with workflow script

**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v1.4.0...v1.5.0

Page 1 of 5

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.