Biomero

What's Changed
* Fixed handling of OMERO datasets/folders with spaces in the name: 12
* Fixed handling of a GIT repo for (job) scripts 11
* changed target folder for slurm-config.ini in description by jo-mueller in https://github.com/NL-BioImaging/biomero/pull/10

New Contributors
* jo-mueller made their first contribution in https://github.com/NL-BioImaging/biomero/pull/10

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.8.0...v1.9.0

- Cleanup after conversion too
- Don't copy metadata from original images anymore (it copied datatype too)

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.7.1...v1.8.0

Fix bugs:
- Slurm job now stops complaining about missing Singularity
- CANCELLED+ state of job array is now handled properly (if you cancel a job array...)
- Cleanup now also removes the large amount of converter logs made by the job array
- Reduced DEBUG logging of imported modules from OMERO and Paramiko
- Fixed a printing bug in the minimal slurm script
- Turned more BIOMERO-scripts print statements into logger statements

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.7.0...v1.7.1

Finetuning!

- Added an Azure deployment for both BIOMERO and SLURM, go see the new tutorial!
- Made the init script async, because we cannot wait in OMERO for all the container images to download on SLURM. That does not scale.
- Split up a few of the init methods into their own methods so you could run them seperately
- Added a new script to check the 'progress' of available workflows on SLURM, called 'SLURM_check_setup'.
- Will probably rename the 'init' category to 'admin' if we keep adding more scripts that are not for end-users but for OMERO admins.

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.6.0...v1.7.0

- Separated file conversion and slurm workflow into 2 jobs to avoid a deadlock
- Added a method to specifically run file conversion to biomero
- Added a slim / simple result class SlurmJob, to allow easier waiting on job completion on slurm. Note it is not asynchronous / concurrent. You just wait the current thread at this moment (which works fine with 1 workflow per omero job).
- Fixed the job status methods to handle job arrays too

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.5.1...v1.6.0

- [BUG] Fix bug where conversion script cannot handle filenames with spaces in them. Now it lists them properly.

**Full Changelog**: https://github.com/NL-BioImaging/biomero/compare/v1.5.0...v1.5.1