Brainglobe-workflows

What's Changed
* Add codecov token by K-Meech in https://github.com/brainglobe/brainglobe-workflows/pull/91
* Update gitignore by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/92
* Remove entry point for cellfinder workflow by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/93
* Cache cellfinder model in CI by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/97
* naive attempt at fixing HDF5 by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/100
* Run cellfinder benchmarks on small data by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/94
* Cache atlases in CI for brainmapper tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/101
* Cache for cellfinder workflow tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/102
* Check benchmarks on CI by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/96
* Rename `cellfinder_core` to `cellfinder` by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/95
* Support single z-stack tif file for input by matham in https://github.com/brainglobe/brainglobe-workflows/pull/88
* Update use of cellfinder.core download cli by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/107
* Follow numpy structure and add asv-specific README by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/104
* Update use of brainglobe-utils image IO by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/108

New Contributors
* K-Meech made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/91

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.5...v1.2.0

What's Changed
* update atlas api import with new name by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/86
* Replace source_custom_config_cellfinder with newer function by matham in https://github.com/brainglobe/brainglobe-workflows/pull/89

New Contributors
* matham made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/89

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.4...v1.1.5

What's Changed
* Update test_and_deploy.yml by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/81
* brainglobe_space name change by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/82


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.3...v1.1.4

What's Changed
* Remove unused code and refactor by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/79


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.2...v1.1.3

What's Changed
* Update GH actions badge by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/77
* Cellfinder config + path change by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/64
* Workflow tests caching by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/62
* Move analysis functionality to brainglobe-utils by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/76


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.1...v1.1.2

Minor updates to `brainmapper`

What's Changed
* Deal with cells falling outside of the registered atlas boundary by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/71
* Rename incorrect instances of cellfinder to brainmapper by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/67
* Simplify brainmapper export by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/69
* Update cellfinder dependency by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/66
* Move heatmap functionality to brainglobe-utils by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/74
* Add hard dependency on brainglobe-meta package by willGraham01 in https://github.com/brainglobe/brainglobe-workflows/pull/72


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.0...v1.1.1