What's Changed * Unpin numpy by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/452 * Remove x86 macOS runners from the test suite by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/453 * [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/cellfinder/pull/455 * Unpin numpy by adamltyson in https://github.com/brainglobe/cellfinder/pull/457 * Schedule weekly tests by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/458 * Pin `keras` version to 3.5.0 by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/462 * Allow napari GUI to accept custom weights by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/460 * [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/cellfinder/pull/461
What's Changed * Conform to new linting rules by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/447 * temporarily depend on numpy<2 by alessandrofelder in https://github.com/brainglobe/cellfinder/pull/448 * [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/cellfinder/pull/445
What's Changed * Update supported Python versions by adamltyson in https://github.com/brainglobe/cellfinder/pull/436 * Add citation to readme by adamltyson in https://github.com/brainglobe/cellfinder/pull/438 * Prevent zero underflow in volume by matham in https://github.com/brainglobe/cellfinder/pull/437 * [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/cellfinder/pull/441 * Standardise contact information in readme by adamltyson in https://github.com/brainglobe/cellfinder/pull/442 * Added xfail to tests that fail due to logging bug by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/444
Move classification to PyTorch This release changes the dependency for classification to PyTorch (from TensorFlow). Users are advised to create a new environment before upgrading.
What's Changed * Update caching by adamltyson in https://github.com/brainglobe/cellfinder/pull/422 * Updating to Keras 3.0 and migrating to PyTorch by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/418 * Update __init__.py by adamltyson in https://github.com/brainglobe/cellfinder/pull/427 * Update final few lines to python 3.11 by adamltyson in https://github.com/brainglobe/cellfinder/pull/428 * Moved force cpu into cellfinder function by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/430 * Remove test dependency duplication by adamltyson in https://github.com/brainglobe/cellfinder/pull/431 * Update default inference batch size by adamltyson in https://github.com/brainglobe/cellfinder/pull/432 * Enable MPS fallback by default by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/433 * [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/cellfinder/pull/434
What's Changed * Remove test dependency duplication by adamltyson in https://github.com/brainglobe/cellfinder/pull/431 * Update default inference batch size by adamltyson in https://github.com/brainglobe/cellfinder/pull/432 * Enable MPS fallback by default by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/433