Neurodamus

Latest version: v3.6.0

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3.6.0

=============
**13 August 2024**

*New Features*
* [BBPBGLIB-975] Improved "signal" shot noise parameterization (187)

*Improvements*
* Read modifications list from libsonata API (181)

3.5.0

=============
**24 July 2024**

*New Features*
* [BBPBGLIB-854] Implement a CLI option to run coreneuron in direct mode without writing model data to disk (100)

*Bug Fixes*
* [BBPBGLIB-1175] Handle deleted sections correctly (182)

*Improvements*
* Allow API configuration to preserve the axons during setup (155)
* Update ngv test to use V10 emodels (183)
* [BBPBGLIB-1167] Automatic balance loading and on-the-fly rebalance (178)
* Replay with NetCons in CoreNEURON as in NEURON (173)

3.4.0

=============
**21 June 2024**

*New Features*
* [BBPBGLIB-1152] Multi-cycle support for dry run estimate and instantiation (171)

*Improvements*
* Remove VecStim to use the version in neurodamus-models (177)
* Accurate synapse counts in dry-run (respect src target) (169)
* Optimize Dockerfile a bit (176)
* [BBPBGLIB-1141] Remove HDF5reader.mod which is already replaced by libsonata (162)

3.3.0

=============
**28 May 2024**

*New Features*
* [BBPBGLIB-1137] Account for nonzero total current when using SEClamp; allow nonzero total

*Bug Fixes*
* Fix record_spikes for load balancing (167)
* [BBPBGLIB-739] Override UTF-8 for logging (147)

*Improvements*
* Removing legacy RNGs, leaving only Random123 (136)
* [BBPBGLIB-1158] Add empirical mechanism to estimate simulation memory usage (165)
* Tests with subprocess should capture streams (164)
* Trigger workflow when pushing to main (172)
* Avoid calling cleanup from destructor (168)
* Add tests for python 3.9 to 3.12 (124)
* Cache dependent packages in GH actions workflow (166)

3.2.1

=============
**30 April 2024**

*New Features*
* [BBPBGLIB-1153] Allow disabling reports from SONATA config (159)

*Bug Fixes*
* Fix dead link from CONTRIBUTING.md to README.rst (160)
* Remove Report.hoc reference (158)

*Improvements*
* [BBPBGLIB-1154] Add information about CORENEURONLIB in the Docker README (161)

3.2.0

=============
**17 April 2024**

*Bug Fixes*
* [BBPBGLIB-1145] Write gids without offset in WholeCell LB complexity file (148)
* [BBPGBLIB-1147] Fixes crashes with KeyError when running sonataconf-sscx-O1 circuit on dry run (149)
* Hotfix to solve crashes when running on certain amount of ranks (141)

*Improvements*
* [BBPBGLIB-1057] Replace Report.hoc by report.py (145)
* [BBPGLIB-1148] Add support for gap junctions in dry run (151)
* Update online-lfp.rst (152)
* Update docker file with the new data location (153)
* Replay with SONATA spikes files (150)
* Clean up wheel contents. (144)
* [BBPBGLIB-1139] Missing exception logging on configuration errors (142)

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