Open-cravat

- Bioconda is only required if using `oc vcfanno`
- Add HGVS input example to GUI
- Layout beautification for submit form

- Filter vcf files on Genotype fields and variant call information such as zygosity, VAF, and read depth. Filters can include complex boolean logic, and can be used with annotation data.
- Directly annotate large, many-sample VCFs using `oc vcfanno`. A new vcf is created with `OC_XYZ` fields in the INFO column. Efficiently uses many threads to process genome-scale input.
- Python 3.12 compatibility
- View errors affecting specific variants from the jobs table in the GUI
- Fixes to checking for and installing annotator updates from the GUI
- Improved config file handling for converters

- Refactor submit page javascript to use modules
- Add end-to-end testing
- Improve example input files: add more variants, GUI examples contain same variants and cmdline example
- Exceptions in annotator setup no longer prevent other annotators from running
- Jobs in GUI can still be opened after changing path of jobs directory
- Change settings icon to gear from hamburger
- Add link to docs in header (? icon)

- Fix to summary widgets. They will no longer use the last run filter when reloading the job without a filter selected.
- On the submit page, the annotate button is not fixed to the bottom of the page.
- Restrict aiohttp version to <4.0.0 in anticipation of changes to the aiohttp api

- Add annotation for Exon Number and End Position in mapper
- Fix bug that occurred when using `oc module install` for a module that was already installed

- Fix job database locking issues when quickly refreshing jobs
- Set default temporary file encoding to utf-8
- Put all job databases in WAL journal mode
- Further improve handling of modules with dependencies. Resolve circular dependencies and improve version resolution.
- Allow lowercase ref bases in input files. Cast bases to uppercase in results.
- Add support for filtering on user created notes.
- Remove filtering for certain vcf INFO columns