- Added option to keep decoys in peptide-level FDR calculation - Added example notebook for protein inference
0.7.7
- Added unit test for get_protein_group_results() - Added default arguments and docstring to get_protein_group_results() - Reduce logging frequency for MaxLFQ - Fix column formatting function reference
- Update job-pool to v0.3.0 - Allow for numpy v2.0
0.7.4
- Make --fasta_use_uniprot_id compatible with quantification - Fix problem with missing delta mass column for andromeda2pin - Add support for ms2rescore percolator format (23) - Refactored update_evidence_from_pout - Remove unsupported mq_msms argument for update_evidence_from_pout
0.7.3
- Fix nondeterministic behavior of decouple_connected_proteins