Pygenomeviz

Change Log

Improvement

- Added `track.add_features()` method

Bug Fix

- Fixed a bug that caused an error in the GUI when uploaded files contain parentheses `()`.

Change Log

Bug Fix

- Fixed bug due to matplotlib v3.8.0 changes (22)
- Fixed `savefig()` to suppress memory leak during multiple plots

Change Log

Improvement

- Added resource warning message for streamlit cloud deployment

Bug Fix

- Fixed gui run error when upload filename contains space char
- Fixed mmseqs run error when protein_id contains `|` char
- Fixed a bug that `gff.get_seqid2size()` got incorrect multi-contig size

https://github.com/moshi4/pyGenomeViz/compare/v0.4.1...v0.4.2

Change Log

Improvement (GUI)

- Added genome comparison result download functionality
- Improved text contents & widget layout
- Adjusted range label padding size

Bug Fix

- Fixed feature coloring bug when facecolor tag is set

https://github.com/moshi4/pyGenomeViz/compare/v0.4.0...v0.4.1

Change Log

New Functionality

- Added GUI (Web browser) functionality using streamlit ([Demo Page](https://pygenomeviz.streamlit.app/))

Improvement

- Improved html viewer tooltip display content
- Changed linter `flake8` to `ruff`

https://github.com/moshi4/pyGenomeViz/compare/v0.3.2...v0.4.0

Change Log

Minor Change

- Added reverse complement option to CLI
- Added **target_strand**, **pseudogene** arguments to `gff.extract_features()` method
- Drop python3.7 support

https://github.com/moshi4/pyGenomeViz/compare/v0.3.1...v0.3.2