Pygenomeviz

Fixed

- Fixed track segment separator position adjustment bug (68)
- Fixed to remove completely overlap alignment links

Change Log

Fixed

- Set encoding="utf-8" explicitly to avoid Windows default encoding issue (63)
- Fixed incorrect gz compressed file extension check logic (64)

Change Log

Added

- Added *extra_tooltip* argument to `add_feature()` method explicitly (61)
- Added `get_seqid2record()` method to Fasta parser class

Changed

- Dropped python3.8 support

Fixed

- Fixed to skip mmseqs search for no cds genome (58)
- Fixed `get_seqid2seq()` method incorrect return type

Change Log

New Functionality

- Added theme option (`light`[default] or `dark`)
- Added Fasta parser class
- Added `load_example_fasta_dataset()` utility function
- Added `to_stack_features()` helper function to avoid feature overlap

Bug Fix

- Fixed to ignore features that have no location (54)

Change Log

Bug Fix

- Fixed a bug that the dependent libraries for HTML viewer were not packaged correctly

Change Log

New Functionality

- Added Features Table to HTML viewer experimentally ([Demo Page](https://moshi4.github.io/pyGenomeViz/images/pgv-viewer_demo2.html))
- Added *unit* argument to `gv.set_scale_xticks()` to enable choose **Gb, Mb, Kb, bp** unit
- Added *target_strand* & *target_range* argument to `gff.extract_exon_features()`

Improvement

- Improved HTML viewer code & UI design
- Fixed to raise error in `gv.savefig_html()` for invalid figure
- Switched package manager `poetry` to `rye`