Sourmash-plugin-directsketch

What's Changed
* MRG: update to sourmash-rs core r0.14.0 by ctb in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/52
* MRG: set zip permissions to 644 by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/53
* MRG: enable dayhoff, hp sketching by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/55
* bump version to 0.3.2 by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/54

Dependabot
* Bump tokio from 1.37.0 to 1.38.0 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/46
* Bump serde from 1.0.202 to 1.0.203 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/45

* Bump regex from 1.10.4 to 1.10.5 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/51


New Contributors
* ctb made their first contribution in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/52

**Full Changelog**: https://github.com/sourmash-bio/sourmash_plugin_directsketch/compare/v0.3.1...v0.3.2

- fixes URL formatting bug in failure output
- adds new `urlsketch` command
- changes failure output format for both `gbsketch`, `urlsketch`. The new header is: `accession,name,moltype,md5sum,download_filename,url`, which matches the `urlsketch` input format.

What's Changed
* fix url printing by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/36
* add `urlsketch` command by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/34

Dependabot and version updates
* Bump anyhow from 1.0.83 to 1.0.86 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/39
* Bump serde from 1.0.201 to 1.0.202 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/38
* Bump camino from 1.1.6 to 1.1.7 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/37
* bump version to 0.3.1 by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/43


**Full Changelog**: https://github.com/sourmash-bio/sourmash_plugin_directsketch/compare/v0.3.0...v0.3.1

This release fixes a bug where the wrong version may be downloaded 27.

The input format has changed slightly! Required columns are now: `accession,name,ftp_path`. `ftp_path` column name must be present, but column can be empty.
- if `ftp_path` is provided, it is used as the path for finding files associated with the accession. Otherwise, `gbsketch` will build the `ftp_path` from the accession.

What's Changed
* optionally use ftp_path input for `gbsketch` by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/29
* prevent unneccesary downloads by also setting genomes-only/proteomes-only via params if not keeping fastas by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/30
* do not require signature output file if not sketching by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/31


**Full Changelog**: https://github.com/sourmash-bio/sourmash_plugin_directsketch/compare/v0.2.3...v0.3.0

What's Changed
* fix ci by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/6
* revert channel sizes by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/23
* bump version to 0.2.3 by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/24


**Full Changelog**: https://github.com/sourmash-bio/sourmash_plugin_directsketch/compare/v0.2.2...v0.2.3

Bugfix Release
- fix a bug where md5sum file error caused `directsketch` to hang

What's Changed
* fix error handling by bluegenes in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/19
* Bump serde from 1.0.200 to 1.0.201 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/12
* Bump anyhow from 1.0.82 to 1.0.83 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/11
* Bump serde_json from 1.0.116 to 1.0.117 by dependabot in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/10

New Contributors
* dependabot made their first contribution in https://github.com/sourmash-bio/sourmash_plugin_directsketch/pull/12

**Full Changelog**: https://github.com/sourmash-bio/sourmash_plugin_directsketch/compare/v0.2.1...v0.2.2

What's Changed
* changed progress reporting back from 5% --> 1%; adjusted to reflect start times better
* remove interval delay by bluegenes in https://github.com/bluegenes/sourmash_plugin_directsketch/pull/16

**Full Changelog**: https://github.com/bluegenes/sourmash_plugin_directsketch/compare/v0.2.0...v0.2.1