Support for GENCODE chrom names for existing pre-trained model Support for parsing new chrom names after pre-training model Fix for tis_transformer functionality
0.8.3
Possible Fix : update biobear which improves bam loading Features: - automatically create output folder - RiboTIE; allow manual determination of folds for pre-training models
0.8.2
Fix: accept lowercase fasta (a,t,c,g,n) accepted while parsing data.
0.8.1
Fix: only parse samples listed by --samples into database. Important for parallel jobs.
0.8.0
Features
- `--pretrain` Support for pre-training a new models using ribosome profiling data. **It is now possible to apply RiboTIE on new species** - `--parallel` : Support for parallel processing of ribo-seq samples for easy deployment on HPC servers. - Ability to process multiple separate config files. As such, it is possible to group settings together. e.g. `ribotie base.yml samples.yml pretrained_model.yml` - `--version` flag
Changes
- refactor : `--ribo` to `--samples` - updated config file handling - multiple configs - all arguments - allow overwriting (yaml parsed before bash arguments)