Uqpy

Changes:

* f8d0b1d6ceb2b85a0f94adf93457febff58fe189 Merge pull request 233 from SURGroup/Development
* f695e37a3ab9e908fd4bef3efcff2f172b0c56fa Merge branch 'master' into Development
* ff07e3ac2b0a1b787d38591af5c4b8ab28cccfee Removes seaborn from example dependencies

This list of changes was [auto generated](https://dev.azure.com/UQpy/UQpy/_build/results?buildId=1156&view=logs).

Changes:

* cce5c3a2360631e334fb7d86958d461f5b2d2f2b Physics-informed PCE capability
* c9a47c227daffd78a6979caf5d160f5781c81f5c Merge branch 'master' into Development
* 58ea332668bf3cbd9484f2df4ff859b151623f9b Merge pull request 231 from SURGroup/feature/PC2
* d35d56189b64e383f5cae9f87fa82bca30ad80dd Type hints in PdeData and PdePCE
* edbce33827f39b40cf147d7add4efe2a54757098 Sonarcloud bugfix
* b718315006583475b70bb765e0a408201b9e2e97 Sonarcloud bugfix
* a7f6dca1e23888fb781c494d035d574dea6cb5a0 Merge pull request 229 from SURGroup/feature/PC2
* 7a51ba0d0ab1c4fad081ca8221624a0d71c2b6a3 Tries to fix Pylint errors
* a5655870e40395b5907a65203b53475abd5d3917 Tries to fix Pylint errors
* 6f1914653819a9743d28c1f829d48bd5873e2d15 Changes to resolve failing import statements
<details><summary><b>See More</b></summary>

* e07eb59dd3ee1eedb6bfd1759e65b5d0c0a986bc Implementation of PC2
* a7a609bfd9d57a4578997586707f301350187c4c Implementation of PC2
* caa492861881b06a2c2575b8d9117f93602c0c34 Implementation of PC2
* da1e62a5ed771784e6177dcb4ba284f61ba2c171 Implementation of PC2
* 68648b78ba8f954cd1582dcf4314aa580272dd08 Implementation of PC2
* dc711f5eede3bdec620835bc374bbd95e1df2bae Implementation of PC2
* 3c72db4cd663ddaa40952073a76b70ca2dd391e8 Merge pull request 228 from SURGroup/bugfix/karcher_mean
* 5a75881fbca17fddf2fa9e7ad47bd80e931dd9b9 Update README.rst
* 6201115675cc2a1e5b8b30ae1d1724514b06bb1b corrected documentation
* c14bae80b930799917f4b434811d7e9e613c8ce2 new and improved test for simple analytic examples on Karcher mean of grassman manifold
* 5c76e0662b58ccc368c2a57fd250337d320739bb deleted test
* c2b2ccd98284efa04de0e8adb045745bf016d072 added test for two point mean on Gr(1,2)

This list of changes was [auto generated](https://dev.azure.com/UQpy/UQpy/_build/results?buildId=1150&view=logs).</details>

Changes:

* 1ea42a6e2a97ca783bbef31822e3b8f232459e16 Merge pull request 227 from SURGroup/Development
* 98761fd3db07904ce22b688b3198d8c81a37a5a0 Merge branch 'master' into Development
* 4e2142d3e1244aa6eb198b0cd377ffcd1584c9a1 Disables flaky tests
* 62696edcfc01b4ec1df9d563ecc8c35ff88c2b84 Merge pull request 225 from SURGroup/feature/inverse_form
* bc50b1c13e64811af46b94efc1636ba7bf6dab23 Merge remote-tracking branch 'origin/Development' into feature/inverse_form
* 52743a020e61c4281228222c7db23c4b5d49cbd4 Merge pull request 224 from SURGroup/feature/documentation_improvements
* d8c3b73b40f6334bedb813f466b9938b2fdc5043 deleted unneeded attribute
* 1aa56e07880f308315646d96e262d9aec2a1e29e fixes dummy syntax
* 9704aa0294266d7aaf1b144e697e4be6f195a318 added logic to run InverseFORM.run() if seed is provided in init
* 6236297eb4c12fc4e38e357b5186b64d20d4f484 added logic to prevent seed_x and see_u from being specified at the same time in __init__
<details><summary><b>See More</b></summary>

* 899522036ef99c28bd2d5ad0a03de3636ae80053 Merge remote-tracking branch 'origin/Development' into feature/documentation_improvements
* 738e25b437037f04200b980465b6f3d03e1d5660 changed title font to match existing documentation
* 6359c16806620eabbb1664ee193d5eec274450bf cleaned up and added docstrings to public and hidden methods, renamed internal variables for clarity and consistency with literature
* adad1d0cb1ee73b51bc70b8e8bf3c8811ff2f3cf deleted unused file
* a75aac526ec918fe4a95b7df38e059cc99acb63b cleaned up notation and attribute documentation
* d9923886b01190ee6b20b6e280fdba63548ec575 fixed minor bug with state_function attribute
* 5a6a1ce2f61c400bef68bb4c77f01b8633381725 added state_function attribute, correct attribute behavior when max number of iterations is reached
* 81335384ef26af127077df38e9aeb1fb407ce9dc grammatical and notation edits to make documentation more consistent with literature references
* adafcdfb17e86098adfb8de5db06631cdcf6500b added references to the new child class InverseFORM
* fa0230243a164d895c95a3a051fc3113cda78b4a editted docstrings for clarity and notational consistency
* 770256bd9e49f6b65cabcee7747934868c60fd62 edited markdown for clarity and notational consistency
* b74b418e173572f403ddb13e4b6d1c32eb4204d5 corrected vector notation in math statement
* 935d45ddb3cb849aa387e9774561d063832cb85a improved docstrings and markdown for cleaniness and consistency in readthedocs
* bd5c57de1327622eaae61cc6dcceb38e8e08678c added InverseFORM to paths so the examples would show up in the ReadTheDocs
* 55db785a8150a2d84bfb829aa0322b857e99dd0b scripts to config and run examples for InverseFORM
* 48b6204ba221f441f055c0e68e4b3c5bb70ca3e9 documentation for InverseFORM as a child of the TaylorSeries class
* c3e5459e133c0f338230fee28a6dc08e8eb47d66 tests for accuracy and behavior under various inputs for InverseFORM class
* 9cd9d75625223176b5927ba9bca18667a4509bbe initial commit of the InverseFORM class
* bbb4341e77f0f18d74f8cf8fe9e9e02f2fcd4e09 Disables example execution
* 333be9b4f28c6d40505f640d9b3cdab148241de1 Disables FORM and SORM examples execution
* 7a5bd248576dcced9b9be77f0c003d7564ba7d6b Corrects equation display in plot_pce_sparsity_lars.py
* 174d578c17c4811415e47b4d3594bc6addf574ab Minor changes to fix reliability examples
* ee0fa3e1ab736f163e63c10c7724cf6971e3bd16 added Connor to development team
* ec3f6e9949a9f3c3bf2b50ca6957afb62c348b14 passes test for seed_u_is_none in FORM.run()
* 06c413a51b1ae8b357a385271da25ca77954198b Merge remote-tracking branch 'origin/feature/documentation_improvements' into feature/documentation_improvements
* 80f360958368b44cbefe9b2e57f312b15d3a0aee added test for seed_u is None in FORM.run()

This list of changes was [auto generated](https://dev.azure.com/UQpy/UQpy/_build/results?buildId=1111&view=logs).</details>

Changes:

* 9e98a6279aa5a2ec2d6d4c61226c34712547bcc6 Merge pull request 222 from SURGroup/Development
* 8e4d0746404cb5735cc28213d7c341c1bd053639 Merge branch 'master' into Development
* ca196b8a7ee059a7cf642d1f9a1264c55f03603d Merge pull request 220 from SURGroup/feature/documentation_improvements
* 83cd4b8e693bbb968a8963fc9dbcca20767ba573 Adds SORM reference
* 857502792d0ddd8785b7e78d9b649bc004263ad2 Corrects SORM documentation
* bcb171b848ccee2ec4470a7b9d71d6d421986817 Adds citation for FORM structural reliability example
* f15aee5dc22b2924189c4dfd9975cc57a90fbba8 made the FORM plots more accurate, useful, and the code more legible
* eb0eca1e136d0ea85928da10c316f01032113b78 Hides auxiliary file in SORM example
* 4435f59387dc581d50b1187eea174f3ead02bdd7 Merge remote-tracking branch 'origin/feature/documentation_improvements' into feature/documentation_improvements
* 5b618473cffd07b90dfa6749282b492c8acc54f6 updated documentation to improve legibility
<details><summary><b>See More</b></summary>

* 8324ebee980e7bdf5777d63374d10d525fcaff1f Fixes minor SORM error
* c133c3d5a9dfcdf87d7ada8f860c495bdcfb8817 updated local variable names to match class attribute names
* 79a3dd0518d6c82ddbb837b317594658c90fdf36 updated local variable names to match class attribute names
* 9319cc15acf013075f39679ac74ef89d676f6f57 Fixes FORM attributes inside SORM
* 4a3d2c87c8c13b9a25c2d6930a02a8026fc68138 Merge remote-tracking branch 'origin/Development' into feature/documentation_improvements
* 013a6bd563b482022eb215e7a5f7f13c87423073 Fixes figures in FORM structural reliability example
* 25a9f44ec2d35762e37315b53eee833b881fc01b fixed typo in LaTeX in docstring
* 3cb5fcd07a354f03a0bfa581c16c895c05ae3ffe Fixes issue 194 - removed duplicate import statement
* 1e7844b52444123e652e0675e5b8a6a1ec3ff4cd fixed minor formatting error in math statement, alphabetized class attributes
* c20aeba21a979211bc4d4e22a18ee834bb4c8bfd added specific versions to packages for compatability
* 9d2f3d0f2eadb737359572f1e00988fd0eb287db removed tabs
* ce3d9066ebee278abbf28c4e16cf5aea3732781b improved documentation, cleaned up and renamed attributes, simplified variable storage after FORM.run() completes
* 653558b2b09c910de158a6dfb1711669d568d74e updated input and attribute names for improved FORM.py
* 717328f37cae7058817e47bde085712b21066c40 fixing examples for updated FORM.py
* 655d0f605456e9cc2379c884fd1f745ecfe8038b improved docstrings
* d41643475cbef2e6a73f9c783ce553baf3e07591 removed incorrected and unneeded example statements
* 00b91193d1d3dfda355a830da5e3071e9a435c99 optimized import statements

This list of changes was [auto generated](https://dev.azure.com/UQpy/UQpy/_build/results?buildId=1074&view=logs).</details>

Changes:

* 680b2676f4df3a3e79fe797ddede4550001b5c8f Merge pull request 216 from SURGroup/Development
* 32d2dc5b80bbb3165b26be9540724a55d63684d9 Merge branch 'master' into Development
* 5136daebec39fb5395c658479cbba1ff05da88a1 Tries to fix Sphinx error
* 89e650986be28a08f9f72772bb96573fc93ab175 Tries to fix Sphinx error
* 9e6a00b9be42bac46f22deee589958953c46594b Fixes sphinx warnings
* d2f3722936bc174d4c4e7c0df3b3d436dd08525f Removes Kernel cross-ref
* 8fb4eea61b90d908facffa603435460dd5f43176 Minor documentation fixes
* 100f7832c69366d16d70aa3e3d1627e5edfe3a98 Disables plotting of Nataf example
* 2135024cafd7b26ba1cad0de63762c11049ab787 Merge pull request 215 from SURGroup/feature/unify_kernels
* 3dc0086665990db16e6f2ea5a41bcfbf4a1ed947 Merge branch 'Development' into feature/unify_kernels
<details><summary><b>See More</b></summary>

* 1080c1543de1b2c2143ba7f6e23a22d045bcf222 Fixes failing import statements due to kernels restructuring
* 73b258c8d8f4a1d23388722ea73fbf20b86a359e Fixes failing import statements due to kernels restructuring
* 0f44a14004e34b2ced255ba88acf07fe17bb1a67 Refactors Dimension Reduction kernels to match GP kernels signatures
* 2917ccae68638025bb5fe743046d82e3aa7892ef Moves GP kernels to utilities
* 5564ab8048dc632ab005628b19b17fcc8d30dbe4 Refactors Gaussian process kernels to abstract from hyperparameters

This list of changes was [auto generated](https://dev.azure.com/UQpy/UQpy/_build/results?buildId=1043&view=logs).</details>

Changes:

* c2f3e5cee83b67f633cc82e7096f6acf2c681432 Merge pull request 214 from SURGroup/Development
* bb2c0ce7086c616f9671d21117cbe62470dbb112 Merge branch 'master' into Development
* 9fe7e31ed00f34ac8fe9b04a2dc41f141b2c884d Merge pull request 213 from SURGroup/feature/increment_minor_version
* 4724b58d563a6c131236ecd2443b6a05aea2054b +semver: minor
* 888209e44cea3dfa6124cbb3009eea1b4bdbc600 Merge pull request 212 from SURGroup/feature/Active_Learning_PCE
* 36269b15d4593e97f9f459353fc99089c3dae9bc Updates standardization code for Uniform and Normal
* e059b2e3a7c07aee7a0c1274a4f770acb458c479 Update documentation of ThetaActiveLearning
* 62845753ade9947526158d1a75d776f8f4c8e547 Added one unit test for standardization
* e859d3cad4c8ec905d520fb3dc3e6f3c0389b07f Updates documentation files
* f52aa944a1e73b9a71aa8f4b32e0f4eaea9ef243 Fixes failing ThetaCriterion test
<details><summary><b>See More</b></summary>

* 1697947ae5779f706096d4ffbfb52f135fc348e1 Example for Theta Criterion
* e33a67385e04131fcca1f2605c6838fc19d63d9c Update ThetaCriterionPCE.py
* 441e35b572b5e9411164fc0606e734be4eb25c51 Update test_pce.py
* 07d267330dc9f0adc1809aff6716008d7bab7f92 Adds theta criterion PCE to __init__.py
* 1790f3728c015b332b01c4a380ec45e100d262c2 Minor naming conventions changes
* b4502edaddad0e3946fb4d8de80fb60c0ed634e9 Active learning for PCE Class
* fd26576517e0178f137f26d0752c5dffe7fd0549 New functions for PCE basis
* d8f2de03978cd5d2825ad19187bcd29692dd9edd Adds missing file copy in ClusterExecution.py
* 9e5f07258d557428bb44a179cc66edab517bd8d2 Merge pull request 205 from SURGroup/feature/RunModel_updates
* e6c48a2a9c6b1a8a32b26c8bdc70192a86dd4f23 Merge branch 'Development' into feature/RunModel_updates
* 45f446cd062b5f9d6110c51cce3ab398d5ae794b Merge pull request 202 from SURGroup/feature/v4/TMCMC
* 15e8d4d2fc7a9bc31dc8811bdd6ff0184405d458 Merge branch 'Development' into feature/v4/TMCMC
* ee6540a852541c9fced90b2098be8541da51415d Updates numpy version from 1.24.2 to 1.22.0
* bdba54a6302b4208d2a596d0b033b23988dafa70 Updates numpy version from 1.21.4 to 1.24.2
* dec5d7220dccd6a219652518c9d4dd11d241f438 Updates test values promitchakroborty
* e5ee158821f80105787304b96ca6f47471c92610 STMCMC test error debug push 2
* 95337031d203d8dcb907cea872f7b8673c3fe621 Merge remote-tracking branch 'origin/feature/v4/TMCMC' into feature/v4/TMCMC
* accae159a44929ec111791c4194d2cda823b1d86 STMCMC test error debug push
* c8db82ec649205b4fc528cbe459bd79b3fc69f1e Minor formatting changes in cluster execution example
* 15cbf30e008a5a6bef567743a63370d5e9643ef5 Merge branch 'Development' into feature/RunModel_updates
* 291bd558eca5fb34598e0533b65c96c86fed5fc5 Merge pull request 196 from shellshocked2003/frontera
* 475df6cdbf03311da2f4dbb91b78191cea0542d2 Merge remote-tracking branch 'origin/Development' into feature/v4/TMCMC
* 6e2f2b7786beed5bdbde03fb3cdc34ee32de1113 Finalizes TMCMC docs
* 3d87f7026e71729b6f78b3aee7823a7d30ed9be1 Merge remote-tracking branch 'origin/feature/v4/TMCMC' into feature/v4/TMCMC
* 8921f9bccac6707bae98157bbbf1e6a5ea366e09 STMCMC documentation and docstrings
* ed1b5bd142ce7753ab6394843caf60f69e0d4e93 STMCMC bug fixes and unit tests
* 1cf219ea7b95cbe72a30c869c2357e291b4f3b7d Merge remote-tracking branch 'origin/feature/v4/TMCMC' into feature/v4/TMCMC
* 0fcdb28349fac0b5f9a22f15fd4477137bef7c9d Update run_script.sh to tile jobs using bash loop and mpirun
* 21fb69509e460ead4bd54f4b593127757acb17cf parallel tempering docstrings: changes to output docs
* 885bcfddbd90b1026f1030b5aafb35778d0d44a5 tempering and parallel tempering documentation
* 5e9dbed5ca49fb9b2bb4fe237983d12b42f9b307 first try at tempering / parallel tempering docstrings
* d897bfc836dddae4f11ee5d77d0294633407e696 Merge remote-tracking branch 'upstream/master' into frontera
* d7db12b28a476d9b16dd46c130d46e622d6c2a77 Added documentation and example for launching parallel job on cluster
* 02a53b6e7d30ff528f9090c0c0ab38d80aceb2a9 Correction for FORM
* 8917c83cfaf1872d474ee2a49edc5d84eb0a9e07 Allows either a single MCMC sampler or list to be provided in ParallelTemperingMCMC.py
* 8fae05274ecc266c03c595fec54ae4be4d40f674 Moves TemperingMCMC files inside mcmc folder
* 89827631c7fa5091f0ed2270a288fbe4125b578c Port TMCMC examples to v4
* 1b479bdfbd21439c1433588a060cfaa7a5de90eb Ports SequentialTemperingMCMC.py to v4
* e758876f4393805f45f8edd3d45571e1de4cb842 Ports ParallelTemperingMCMC.py to v4
* b87cf474ab6f2ca054ee8bd23e9d89d24a777c85 Starts TMCMC porting
* cfdf3dfd512b910f8c3ec7d58d0ebeb8d78fa9ae Adds Parallel and Sequential Tempering files
* 8d93c72ca078339a9b5fb36ab6fc97edbc99e822 Finished adding cluster exectution model, will test multi-node deployment on HPC next
* bc6fda0c50af9f75af22d7fffe0e8416264044f1 Update to fix issue related to Iterable
* 283f40a0139abc5751a8799ba950e9a451279e5f Merge remote-tracking branch 'upstream/master' into frontera
* 8dc7cd49910a5d8920655dc3ce62d6ea2e1a2399 Adding cluster execution model
* 179306f6a51dfa7c6484b919af5e27ae7341ac7b Merge remote-tracking branch 'upstream/master' into frontera
* a023a25d888685798361057c9077e707bbb8e287 Changes to run on Frontera: separate preprocessing, model run, and post processing to only use ibrun on computationally intensive portions
* d52d06f660e434ff8640f1a13d23b0ee51cddc65 Changes to RunModel to execute tiled MPI jobs on Frontera

This list of changes was [auto generated](https://dev.azure.com/UQpy/UQpy/_build/results?buildId=1028&view=logs).</details>