Alignparse

Latest version: v0.6.3

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Fixed
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* ``sort_mutations`` and ``MutationRenumber`` handle negative site numbers.

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Added
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* ``sort_mutations`` function to sort mutations by site, and optionally concatenate them.

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Added
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* ``MutationRenumber`` class to enable re-numbering of mutations.

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Fixed
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* Removed ``--for-only`` from ``OPTIONS_VIRUS_W_DEL``

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Added
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* ``Summaries`` now parses ``np`` (number of passes) tags from ``ccs`` version 5.0 FASTQs.

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Added
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* ``Summaries`` now handles summaries from ``ccs`` version 5.0

Has known vulnerabilities

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