- cDNA replaces qPCR throughout (when referring to cDNA gene expression style assays). qPCR didn't make sense, as gDNA primers can be used in qPCR.
- contig argument is removed from primary functions, instead users should supply a contig:position string as the target. for example `2L:28545767`. For cDNA primers, target should be an AGAP identifier, from which the contig will be automatically determined.
- In the long notebook, there is now a single prepare_sequence function instead of two functions with an if else statement.