Apeer-ometiff-library

- Clean the setup file with only required libraries. (Closing issue 15 ).
- Removed unused xmltodict library.
- Unified the dimension order of the array outputted after reading to TZCXY.

- fixed scikit image version problem and clean ifs statement
- fixed error of update function (adding ' ' before '/>')
- fixed implementation errors in the processing file
- changed ome-tiff library version
- removed all useless requirements and scikit image
- updated read and write function to new verions of library and added gen_xml function
- Added last version of the omexml python bioformats class
- Fix kwargs directly passed into apply_3d_trafo_zstack function (17)
- Fixes unused import not listed in the setup.py requirements

Thanks to abh799 f-marelli