Ataraxis-automation

Minor Feature Update
- Re-pinned all dependencies to properly constrain them to major versions
- Updated all development environments
- Minorly optimized mypy type-analysis performance during tox linting task.
- Fixed various text errors in pyproject.toml, ReadMe.md and tox.ini

**Full Changelog**: https://github.com/Sun-Lab-NBB/ataraxis-automation/compare/2.0.2...2.1.0

Minor Patch
- Fixed minor bugs and errors.
- Improved source code documentation.
- Optimized tox configuration and pyproject.toml file.
- Improved ReadMe.
- Added ataraxis-base-utilities 1.1.0+ compatibility.
- Exported development conda environment files.

What's Changed
* Future by Inkaros in https://github.com/Sun-Lab-NBB/ataraxis-automation/pull/5


**Full Changelog**: https://github.com/Sun-Lab-NBB/ataraxis-automation/compare/2.0.1...2.0.2

Minor Patch
- Fixed log directory generation during cli configure_console() method runtime. Previously, the function only tried generating the final directory of the path, ignoring any parents. On many systems, this led to a 'FileDoesNotExist' error. The directory generation command has been updated to ensure all nodes of the path exist.
- Also fixed tox.ini 'upload' command to use the updated name for the pypi token acquisition script.

What's Changed
* V2.0.1 by Inkaros in https://github.com/Sun-Lab-NBB/ataraxis-automation/pull/4


**Full Changelog**: https://github.com/Sun-Lab-NBB/ataraxis-automation/compare/2.0.0...2.0.1

Major API Update
- Rewrote the library to use pathlib.Path instead of os.path where possible.
- Optimized the logic of all automation operations where possible to improve runtime speed and code readability.
- Expanded the range of conda environment methods to include environment creation from pyproject.toml dependencies, environment .removal, project installation and project de-installation.
- Added support for mamba and uv as faster engines for 'conda' and 'pip' commands.
- Added tests for all non-cli functions to verify they work as expected. Since the library is designed to use cli functions as wrappers for 'processing' functions, the tests generally extend to cli functions.
- Optimized project documentation.
- Optimized and pinned project dependencies to major versions.
- Removed 'utilities' and replaced them with dependency on ataraxis-base-utilities.
- Switched to using the Console class from ataraxis-base-utilities to handle terminal and log-file messaging (uses loguru backend for enhanced functionality).
- Also includes many smaller bug fixes and improvements.

What's Changed
* V2.0.0 by Inkaros in https://github.com/Sun-Lab-NBB/ataraxis-automation/pull/3


**Full Changelog**: https://github.com/Sun-Lab-NBB/ataraxis-automation/compare/1.0.5...2.0.0

Minor Patch
- Includes patches 1.0.3 to 1.0.5:
- 1.0.3 + 1.0.4: Jointly fixed a bug that prevented root library directory from being resolved. 1.0.3 Ensured that the pipeline loops over all elements in the source directory rather than just evaluating the first returned by os.listdir() and 1.0.4 made it so only the length of directories is factored in the decision to validate or invalidate the proposed root candidate.
- 1.0.5: Removed the leftover print statements used for emergency-debugging :)

What's Changed
* V1.0.3 by Inkaros in https://github.com/Sun-Lab-NBB/ataraxis-automation/pull/2


**Full Changelog**: https://github.com/Sun-Lab-NBB/ataraxis-automation/compare/1.0.2...1.0.5

Minor Patch
- Added missing pyyaml dependency (to toml file and development environments)
- Streamlined certain ReadMe sections, added missing badges

What's Changed
* Merging v 1.0.2 by Inkaros in https://github.com/Sun-Lab-NBB/ataraxis-automation/pull/1

New Contributors
* Inkaros made their first contribution in https://github.com/Sun-Lab-NBB/ataraxis-automation/pull/1

**Full Changelog**: https://github.com/Sun-Lab-NBB/ataraxis-automation/compare/1.0.1...1.0.2