Atomica

Latest version: v1.28.5

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1.27.0

- `ProjectData.get_ts()` now correctly handles retrieving timeseries data from interactions and transfers with underscores in their name
- `ProjectData` now validates that transfer and interaction names are unique
- Improved handling Excel cell references if population names and framework variable full names overlap
- Added ability to place 'ignore' directives in places other than the first column of a spreadsheet, to selectively ignore parts of lines. Added documentation to cover this functionality.
- Fixed a bug where cells that were documented as being ignored actually populated content

1.26.7

- Warning messages now print the file/line they were generated from
- Added extra documentation on parallels with explicit ODE compartment models

1.26.6

- Improve error message if calibration file contains duplicate entries

1.26.5

- Transfer parameters no longer raise an error if specified in 'Duration' units
- Transfer parameters in rate units are no longer limited to a maximum value of 1

*Backwards-compatibility notes*

- Transfers in rate units with a databook value greater than 1 were internally limited to a value of 1 previously. Models with such transfers will produce different results. This is expected to be uncommon, as most models have transfer parameters with values less than 1.

1.26.4

- Some numerical errors in `model.py` (particularly relating to errors/warnings in parameter functions) are now caught and printed with more informative error messages.

1.26.3

- Change the table parsing routine again to resolve further edge cases, restore removal of leading and trailing spaces from cells in the framework, and improve performance. The original `None` behaviour has consequently been restored (undoing the change in 1.26.2) although it is still recommended that `pandas.isna()` is used instead of checking for `None`.

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