Aucmedi

:sparkles: New Features
- [`f02195e`](https://github.com/frankkramer-lab/aucmedi/commit/f02195e1d33f5044a729beb9e0ca6b877213a64d) - **Evaluation**: added show option for dataset evaluation plots *(commit by [muellerdo](https://github.com/muellerdo))*

:bug: Bug Fixes
- [`976369a`](https://github.com/frankkramer-lab/aucmedi/commit/976369a2aa39754193bf8e83a1b49888df8eef56) - **Evaluation**: fix incorrect AUC computation - closes [#165](https://github.com/frankkramer-lab/aucmedi/pull/165) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`cbe64f9`](https://github.com/frankkramer-lab/aucmedi/commit/cbe64f965e4be48d9bc464b457eb83d4a12c97f1) - **Evaluation**: add non-complete data support for confusion matrix - closes [#167](https://github.com/frankkramer-lab/aucmedi/pull/167) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`81173d3`](https://github.com/frankkramer-lab/aucmedi/commit/81173d39636a80c6dc2301459c25b5b3e8c65848) - **XAI**: replace separator chars with . for xai_decoder result saving - fixes [#169](https://github.com/frankkramer-lab/aucmedi/pull/169) *(commit by [muellerdo](https://github.com/muellerdo))*

:white_check_mark: Tests
- [`ed10587`](https://github.com/frankkramer-lab/aucmedi/commit/ed10587b62e39f131337253c6d5416fe4e53c2df) - **Evaluation**: added edge case support of non-complete data for confusion matrix *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c6dae5d`](https://github.com/frankkramer-lab/aucmedi/commit/c6dae5dcbfa92f6342fe38675e5ebef6da05cc79) - **XAI**: added test for xai_decoder with directory interface *(commit by [muellerdo](https://github.com/muellerdo))*

:construction_worker: Build System
- [`abb5601`](https://github.com/frankkramer-lab/aucmedi/commit/abb56019c931b0819a315a244a9fd47277de28f4) - updated to version 0.7.1 *(commit by [muellerdo](https://github.com/muellerdo))*

:memo: Documentation Changes
- [`168c1e2`](https://github.com/frankkramer-lab/aucmedi/commit/168c1e2cfa64a71127d312de0966c442c8a2cab6) - Various updates in README and addition of tutorial placeholder on website *(commit by [muellerdo](https://github.com/muellerdo))*
- [`96bca31`](https://github.com/frankkramer-lab/aucmedi/commit/96bca31eb73fc664078da3d2fc8333706ebfff79) - **README**: removed getting started chapter title artefact *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5d336f4`](https://github.com/frankkramer-lab/aucmedi/commit/5d336f4877d10516a9c43acc911210635029f519) - **Subfunctions**: removed artefact init docs of ABC *(commit by [muellerdo](https://github.com/muellerdo))*
- [`173b529`](https://github.com/frankkramer-lab/aucmedi/commit/173b5294d179b921f49507b0be07a701187befb6) - **XAI**: added return docs for xai_decoder - closes [#143](https://github.com/frankkramer-lab/aucmedi/pull/143) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`96765ed`](https://github.com/frankkramer-lab/aucmedi/commit/96765edc09b725f3362ffc2c3c371d38c645fd89) - **Contributing**: enhanced contributing guideline *(commit by [muellerdo](https://github.com/muellerdo))*

:sparkles: New Features
- [`21323b5`](https://github.com/frankkramer-lab/aucmedi/commit/21323b5be0db2f8c6e3a815e46cf5c93200fc16c) - **Ensemble**: Implemented Composite (cross-validation based stacking) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`20f61f4`](https://github.com/frankkramer-lab/aucmedi/commit/20f61f4a139f29d3ddb12d9891006775c77f5ab4) - **AutoML**: Implemented function block - training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`099e105`](https://github.com/frankkramer-lab/aucmedi/commit/099e105e5300632e0e09022af301c2f86c1487b0) - **AutoML**: Added multilabel support for function block training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`74fcfbd`](https://github.com/frankkramer-lab/aucmedi/commit/74fcfbdef5ea77b85766f1b57a69ce9233128139) - **AutoML**: added metadata storing in training block *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5fab10a`](https://github.com/frankkramer-lab/aucmedi/commit/5fab10a70372ac564074c15b7779dfd02fba6a52) - **AutoML**: Implemented function block prediction *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2a2e9e9`](https://github.com/frankkramer-lab/aucmedi/commit/2a2e9e9019d700eedce0120941463b53312ca695) - **AutoML**: Implemented XAI option in code block inference *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5b4c095`](https://github.com/frankkramer-lab/aucmedi/commit/5b4c0958cb74e9d3a994cfb46309f91ed44cd786) - **Evaluation**: added support for transfer learning in fitting evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`47aff85`](https://github.com/frankkramer-lab/aucmedi/commit/47aff855b41d99f463a81168a0d45173566ec7cf) - **AutoML**: added evaluation plot generation in block function training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`fad6f2d`](https://github.com/frankkramer-lab/aucmedi/commit/fad6f2d597db5ca1f76673cd9766b56c5debd821) - **AutoML**: implemented block function evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f7ccf82`](https://github.com/frankkramer-lab/aucmedi/commit/f7ccf82e42566260aa75a278e8c4a64d135a70c4) - **AutoML**: Added CLI parser for Training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c521785`](https://github.com/frankkramer-lab/aucmedi/commit/c5217857dec6a572a733454be0216a61c8f86932) - **AutoML**: added CLI interface for YAML *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0b52a90`](https://github.com/frankkramer-lab/aucmedi/commit/0b52a901eb2a57fc804c30d4d48ae21cf4b2f668) - **AutoML**: added CLI interface for prediction *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6a54157`](https://github.com/frankkramer-lab/aucmedi/commit/6a54157cc209253875608ad95bed14fb6fe6075d) - **AutoML**: added CLI interface for evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2f90edd`](https://github.com/frankkramer-lab/aucmedi/commit/2f90edde91698c42ad7194bca03fa57c3b3a42e5) - **AutoML**: added more sanity checks to evaluation function block *(commit by [muellerdo](https://github.com/muellerdo))*
- [`7f66f48`](https://github.com/frankkramer-lab/aucmedi/commit/7f66f48144a7043deca40f95bae9d5ef5bd8a5eb) - **performance**: add display option for charts *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`87ae17a`](https://github.com/frankkramer-lab/aucmedi/commit/87ae17a3482acc483c14e674272fa49f3b581e84) - **io_interfaces**: add file extension to index_list *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`2d563b0`](https://github.com/frankkramer-lab/aucmedi/commit/2d563b0203b0c3f36e4c4c935f1dd39528d1a61e) - **AutoML**: added binary packaging via entry script *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2c5ac70`](https://github.com/frankkramer-lab/aucmedi/commit/2c5ac70646a08961ff937f1f4747d78aee8c3065) - **data_processing**: Improve documentation *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`3566791`](https://github.com/frankkramer-lab/aucmedi/commit/3566791270ff2030af5c2a75522dd367bd55da74) - **AutoML**: reworked AutoML CLI arguments - closes [#151](https://github.com/frankkramer-lab/aucmedi/pull/151) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`96c8d44`](https://github.com/frankkramer-lab/aucmedi/commit/96c8d4448c02b99ef8f18d2a2c2d7219ee410f45) - **AutoML**: dockerized AUCMEDI AutoML - closes [#150](https://github.com/frankkramer-lab/aucmedi/pull/150) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c53819f`](https://github.com/frankkramer-lab/aucmedi/commit/c53819fc007321de9f62aa36add80f4668418931) - **evaluation**: display fitting progress *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`4711894`](https://github.com/frankkramer-lab/aucmedi/commit/471189428aaba759d7762b6a4c5fcdd202685b71) - **Evaluation**: added full transfer learning support for fitting evaluation - closes [#157](https://github.com/frankkramer-lab/aucmedi/pull/157) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`cbc2510`](https://github.com/frankkramer-lab/aucmedi/commit/cbc251038a3c9a6f1f9f4e4172923642716b8f68) - **Stacking**: added automated standardize and resize parameter estimation for DataGenerator *(commit by [muellerdo](https://github.com/muellerdo))*

:bug: Bug Fixes
- [`ea04aad`](https://github.com/frankkramer-lab/aucmedi/commit/ea04aada05e1efbdd680f50d7657f4cc34117a60) - **Ensemble**: Added missing library import in Stacking & Bagging *(commit by [muellerdo](https://github.com/muellerdo))*
- [`cc53a57`](https://github.com/frankkramer-lab/aucmedi/commit/cc53a57921c23d2f4c23ebe3b52a553d3bce48ec) - **AutoML**: changed incorrect grayscale parameter of DataGenerator in training function block *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8b973d2`](https://github.com/frankkramer-lab/aucmedi/commit/8b973d24aa21072821fcad8c4255e4843152f484) - **AutoML**: some hotfixes for AutoML XAI support *(commit by [muellerdo](https://github.com/muellerdo))*
- [`7c78357`](https://github.com/frankkramer-lab/aucmedi/commit/7c78357ecf3d6a793bdc2e8e6d10ed129bce4c60) - **AutoML**: incorrect output path as directory creation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4a23572`](https://github.com/frankkramer-lab/aucmedi/commit/4a235726767761c421d7c4ef9b6ed509079af84e) - **AutoML**: added more config parsing for CLI (3D shape, input and output path) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c31355d`](https://github.com/frankkramer-lab/aucmedi/commit/c31355de00709283ea1d9de1f233932049360bdd) - **Evaluation**: catch no-possible AUROC computation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f4b165c`](https://github.com/frankkramer-lab/aucmedi/commit/f4b165c97dc8917da015dd1b20660cb51aea9cde) - **AutoML**: fixed multiple architecture passing for advanced training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6729798`](https://github.com/frankkramer-lab/aucmedi/commit/6729798a139628a5544be15c19d59c0dbc007f33) - **Evaluation**: fixed unequal length of training epochs by multi model pipelines *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c5f9712`](https://github.com/frankkramer-lab/aucmedi/commit/c5f971266fbb00dab15793783e1507e66a26b6ab) - **AutoML**: forget to exluce yaml parser function in main runner *(commit by [muellerdo](https://github.com/muellerdo))*
- [`05169cf`](https://github.com/frankkramer-lab/aucmedi/commit/05169cfcb70e8df537901154417194dbcc83d408) - **XAI**: added missing inverse of occlusion sensitivity heatmap *(commit by [muellerdo](https://github.com/muellerdo))*
- [`87e3f9d`](https://github.com/frankkramer-lab/aucmedi/commit/87e3f9d3c77a76780105d2b35985c569d65482ab) - **evaluation**: fix evaluate training charts *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`e474282`](https://github.com/frankkramer-lab/aucmedi/commit/e474282d438447d1daa10c60b05c1fd4831a8a7e) - **Evaluation**: added support for only transfer learning epochs in evaluate_fitting() *(commit by [muellerdo](https://github.com/muellerdo))*

:zap: Performance Improvements
- [`c79110f`](https://github.com/frankkramer-lab/aucmedi/commit/c79110facdc1197b12482c6ee700465271b6622a) - **Ensemble**: Replaced python built-in multiprocessing to pathos multiprocessing *(commit by [muellerdo](https://github.com/muellerdo))*
- [`816fea3`](https://github.com/frankkramer-lab/aucmedi/commit/816fea3ec8604c58f17db96c9166af073d21a097) - **Ensemble**: Re-initialize NeuralNetworks in processes to allow custom loss functions *(commit by [muellerdo](https://github.com/muellerdo))*
- [`ab6c0bc`](https://github.com/frankkramer-lab/aucmedi/commit/ab6c0bc4e6cb78a98fa060badf46d59ff68e2f38) - **Ensemble**: allow dumping of ensemble output into already existing directories *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d3988a5`](https://github.com/frankkramer-lab/aucmedi/commit/d3988a5a72b94736022629414ea0ea44d01fff5c) - **AutoML**: Various improvements of the function block training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e5b8ae2`](https://github.com/frankkramer-lab/aucmedi/commit/e5b8ae28b4b4cfc0e883698d6538d27a1acda689) - **AutoML**: added sanity checks for multi_label supported metalearners *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2b9b355`](https://github.com/frankkramer-lab/aucmedi/commit/2b9b35593beff2bad117003cba1a3a2e0e43c7dd) - **Evaluation**: call explicit categorical parsing of class names for omnious class names (numbers) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`834799e`](https://github.com/frankkramer-lab/aucmedi/commit/834799e7952dbb0a163b7f791d83c15fd30cd3d5) - **AutoML**: switched csvlogger to append mode *(commit by [muellerdo](https://github.com/muellerdo))*
- [`850a6a1`](https://github.com/frankkramer-lab/aucmedi/commit/850a6a141fb9fd38586e8c2575e48332cf8a0e12) - **AutoML**: adjusted training hyperparameters of early stopping & dynamicLR *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e3fe4ff`](https://github.com/frankkramer-lab/aucmedi/commit/e3fe4ffa8bf768c93d5df991558480adbd7951cb) - **AutoML**: increased batch size from 12 to 24 *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3db0252`](https://github.com/frankkramer-lab/aucmedi/commit/3db02527e06fd75fb6533c50d35f9dfc9933b518) - **AutoML**: increased sensitivity for help page hook *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2dea1e1`](https://github.com/frankkramer-lab/aucmedi/commit/2dea1e107747c44f8a26a326e41c7a6ea314e7d8) - **NeuralNetwork**: increased default number of transfer learning epochs to 10 *(commit by [muellerdo](https://github.com/muellerdo))*

:recycle: Refactors
- [`dfea756`](https://github.com/frankkramer-lab/aucmedi/commit/dfea756f069b400fc66e5791a8ba958603ea8e54) - **AutoML**: Changed analysis name from composite to advanced *(commit by [muellerdo](https://github.com/muellerdo))*
- [`43ccaa1`](https://github.com/frankkramer-lab/aucmedi/commit/43ccaa16dd76393a0f69765690c1db26f6deedf9) - **AutoML**: Removed data augmentation option from config *(commit by [muellerdo](https://github.com/muellerdo))*
- [`cca63ad`](https://github.com/frankkramer-lab/aucmedi/commit/cca63ad07c9a348810e1798ec389b634d6997b8e) - **AutoML**: renamed attribute 'two_dim' to 'three_dim' *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b400348`](https://github.com/frankkramer-lab/aucmedi/commit/b4003484b4a3323089aaa292d08417ff59b5a722) - **AutoML**: Introduced new AutoML submodule structure *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e228403`](https://github.com/frankkramer-lab/aucmedi/commit/e22840345b9e2dc101b6f5774bb06c40e281f2b1) - **AutoML**: refactored AutoML script structure *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4a22ed0`](https://github.com/frankkramer-lab/aucmedi/commit/4a22ed0c629f2e9fed94d8adbca046fba08a00eb) - **AutoML**: added empty script file for yaml parser *(commit by [muellerdo](https://github.com/muellerdo))*
- [`97adf14`](https://github.com/frankkramer-lab/aucmedi/commit/97adf14739decf2f81fa2fd49b607735af968926) - **AutoML**: separated main method and runner of AutoML main *(commit by [muellerdo](https://github.com/muellerdo))*

:white_check_mark: Tests
- [`c9eae04`](https://github.com/frankkramer-lab/aucmedi/commit/c9eae04ca77f0a815d3504917f900b52097be573) - **Ensemble**: Added unittesting for Composite *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d9b7e58`](https://github.com/frankkramer-lab/aucmedi/commit/d9b7e5864cfe82665d8d28eaa0a69dc451f9e1f8) - **Ensemble**: removed remaining debugging prints *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3657ac5`](https://github.com/frankkramer-lab/aucmedi/commit/3657ac554310a760c388a37462d9715ccb300395) - **AutoML**: added unittesting for AutoML function block training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`173d235`](https://github.com/frankkramer-lab/aucmedi/commit/173d2356c597290c6eb6c4db367f65afeebb6074) - **AutoML**: Updated some class names and docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6f00ca2`](https://github.com/frankkramer-lab/aucmedi/commit/6f00ca2f3004a84d43df605699da344f58d095ae) - **AutoML**: Added unittesting for function block prediction *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2024f9a`](https://github.com/frankkramer-lab/aucmedi/commit/2024f9a199ad33f9989e6828d0d3c5e801eab906) - **AutoML**: Added tests for XAI *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d350858`](https://github.com/frankkramer-lab/aucmedi/commit/d35085866cbc43bab69bdef48e7aac57ae821bc5) - **AutoML**: added unittesting for block function evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`7733e34`](https://github.com/frankkramer-lab/aucmedi/commit/7733e3422c49ba033373ce2a3a1e6cc63acb7260) - **AutoML**: added unittesting for CLI *(commit by [muellerdo](https://github.com/muellerdo))*
- [`a44bf25`](https://github.com/frankkramer-lab/aucmedi/commit/a44bf2552edaefc44bd4a2c44d8a80efd18e29a4) - **AutoML**: removed no argument testing *(commit by [muellerdo](https://github.com/muellerdo))*
- [`9e75baf`](https://github.com/frankkramer-lab/aucmedi/commit/9e75bafd3d88e4e544d74a40d2eae19906dd98f8) - **Evaluation**: added unittesting for only transfer learning fitting_evaluate() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0f068aa`](https://github.com/frankkramer-lab/aucmedi/commit/0f068aa93eb0b11ba290150a46ea36d7ffa62aa9) - **AutoML**: test CLI only for build Action *(commit by [muellerdo](https://github.com/muellerdo))*

:construction_worker: Build System
- [`018aed8`](https://github.com/frankkramer-lab/aucmedi/commit/018aed8d34a31b803dd4884d5814a845a4383b1d) - Added pathos as dependency *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1a76950`](https://github.com/frankkramer-lab/aucmedi/commit/1a76950210da5195f3fa2224c3ad4823222faef8) - **AutoML**: fixed a typo in docker release *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f0128d4`](https://github.com/frankkramer-lab/aucmedi/commit/f0128d499ad22edc326c01ce75d271af23266bf1) - **Security**: updated Pillow & Tensorflow version *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4e5da31`](https://github.com/frankkramer-lab/aucmedi/commit/4e5da31bacfb8cc66123607f7960fb06b44d3e9d) - **CodeQuality**: changed codecov coverage from requirements to setup build *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d0504ac`](https://github.com/frankkramer-lab/aucmedi/commit/d0504ac460329b0c9cefc3a7ab69877dc2fc1a85) - Updated to version 0.7.0 *(commit by [muellerdo](https://github.com/muellerdo))*

:memo: Documentation Changes
- [`6183d72`](https://github.com/frankkramer-lab/aucmedi/commit/6183d7211da5d98f5363f55df44762b692112fb2) - **Website**: Modified relatives pathes of Home page for gh-pages *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5fcf2fe`](https://github.com/frankkramer-lab/aucmedi/commit/5fcf2fead8aa3d75af8c3628ebddb3a70125556c) - **Website**: fixes contribution image on website *(commit by [muellerdo](https://github.com/muellerdo))*
- [`7787ff8`](https://github.com/frankkramer-lab/aucmedi/commit/7787ff8357383b7f503d4ba20055bfb5470728b8) - **Reference**: added Zenodo link *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5e9041d`](https://github.com/frankkramer-lab/aucmedi/commit/5e9041d024c435c3483861c5d6c690755da371c3) - **PyPI-README**: Fixed broken link of logo *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3049080`](https://github.com/frankkramer-lab/aucmedi/commit/30490801280d8081e6e9e6ee28428a32df80df1f) - **Website**: fixed incorrect getting started link from README *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e9f160e`](https://github.com/frankkramer-lab/aucmedi/commit/e9f160e35b13a242d852e3e4b4bee8b7d6a87f39) - **Website**: added site_url to mkdocs.yml - fixes broken 404 pages *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b72e728`](https://github.com/frankkramer-lab/aucmedi/commit/b72e7288bed0006397cb59c4ec62150908c019bd) - **Website**: Moved workflow figure to separate nav tab *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8c3408e`](https://github.com/frankkramer-lab/aucmedi/commit/8c3408ef884adaa89b485e3a1a61459f03c803cf) - **Evaluate**: Fix incorrect example in Comparison *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0fdab3a`](https://github.com/frankkramer-lab/aucmedi/commit/0fdab3a8d03d91a7973ff2432a17196f889f51a8) - **Reference**: Added ORCID for Simone Mayer *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1edb7fb`](https://github.com/frankkramer-lab/aucmedi/commit/1edb7fbb8e5c92f382b889bdfe7a5d45b692e46f) - **AutoML**: fixed incorrect comment in training block function *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4ed4995`](https://github.com/frankkramer-lab/aucmedi/commit/4ed4995837828d2b7268b9dd28874b9168fd688a) - **AutoML**: Added docstrings to train and predict function blocks *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4522abe`](https://github.com/frankkramer-lab/aucmedi/commit/4522abe0579597480a0e04e08ef4643ce5f08df6) - **AutoML**: improved cli help documentation for prediction *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1b8f2bd`](https://github.com/frankkramer-lab/aucmedi/commit/1b8f2bd76211327908a0268d4af5e9a8973fad61) - **DataGenerator**: enhanced warning info of passing expected DataGenerator parameters *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8ecce74`](https://github.com/frankkramer-lab/aucmedi/commit/8ecce74dadc0fa7efb3dedcfea29e4a21e26d77f) - **DataGenerator**: added passing of model meta parameters to DataGenerator examples - closes [#149](https://github.com/frankkramer-lab/aucmedi/pull/149) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2d3a589`](https://github.com/frankkramer-lab/aucmedi/commit/2d3a589fa255bc6a4a43aa7119cea22ea88d11f5) - **AutoML**: added documentation base structure for AutoML *(commit by [muellerdo](https://github.com/muellerdo))*
- [`faf7d26`](https://github.com/frankkramer-lab/aucmedi/commit/faf7d26de334fe463da15bfe903d670aefb4b86a) - **README**: Updated README quick start example *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1604fa1`](https://github.com/frankkramer-lab/aucmedi/commit/1604fa1c86452acdc58293aa4139bc8be691d20c) - **AutoML**: started on AutoML quick start docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`333677d`](https://github.com/frankkramer-lab/aucmedi/commit/333677d9307cc78944d47a9c835331095d1b3991) - **AutoML**: added AutoML Quick Start & updated framework Quick Start *(commit by [muellerdo](https://github.com/muellerdo))*
- [`fcebb7b`](https://github.com/frankkramer-lab/aucmedi/commit/fcebb7bdc3f550b1ecbae69d0fee87cddac8076c) - **AutoML**: refactoring AutoML docs structure *(commit by [muellerdo](https://github.com/muellerdo))*
- [`045c1c9`](https://github.com/frankkramer-lab/aucmedi/commit/045c1c9771870b48af5b16709ca2b15677ad5a35) - **Roadmap**: updated status by adding AutoML support *(commit by [muellerdo](https://github.com/muellerdo))*
- [`fbffc3b`](https://github.com/frankkramer-lab/aucmedi/commit/fbffc3bfe5a2e4e52a399592962e78bbf7c364d7) - **AutoML**: updated installation docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`75b724d`](https://github.com/frankkramer-lab/aucmedi/commit/75b724d2144648183f9c6e1313e9f1dd9f7d9669) - **AutoML**: added Dataset description for AutoML *(commit by [muellerdo](https://github.com/muellerdo))*
- [`07debab`](https://github.com/frankkramer-lab/aucmedi/commit/07debab15bee11062fd33fcd2cd6d6ea50bc7c1b) - **AutoML**: fixed a broken image link in AutoML Dataset *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5ed641a`](https://github.com/frankkramer-lab/aucmedi/commit/5ed641a28cbfe75693eacd000a193c8f335e8cb4) - **AutoML**: added AutoML overview page *(commit by [muellerdo](https://github.com/muellerdo))*
- [`813cae2`](https://github.com/frankkramer-lab/aucmedi/commit/813cae2b1ffc45f40f712f13e2a97255fb462745) - **AutoML**: added docs for AutoML parameters *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6e66125`](https://github.com/frankkramer-lab/aucmedi/commit/6e66125d4f5d85e1adc41d197e492d7b1448e02d) - **AutoML**: implemented introductions to AutoML interfaces Docker & CLI *(commit by [muellerdo](https://github.com/muellerdo))*
- [`bdd4581`](https://github.com/frankkramer-lab/aucmedi/commit/bdd4581b5b18c3248460be5c1b2f80d9121b3df0) - **Metaleaner**: added warning about multi-label support to Metalearner submodule *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e6348e5`](https://github.com/frankkramer-lab/aucmedi/commit/e6348e56435b27852d1240052e702361a5850006) - **Ensemble**: added warnings for automatic DataGenerator parameter estimation in Stacking & Composite *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b569043`](https://github.com/frankkramer-lab/aucmedi/commit/b569043a2a768e71f962b7e12cea32693a7f65a4) - **AutoML**: added usage page for AutoML CLI *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6a42c24`](https://github.com/frankkramer-lab/aucmedi/commit/6a42c24a857bcde13331e4be3d0a1cb6f2df9ab3) - **AutoML**: changed code block formats *(commit by [muellerdo](https://github.com/muellerdo))*
- [`729fc1b`](https://github.com/frankkramer-lab/aucmedi/commit/729fc1b07168d555892935ccb96d9ef79914d181) - **AutoML**: implemented AutoML usage docs for Docker *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4421c99`](https://github.com/frankkramer-lab/aucmedi/commit/4421c9929608d84a7ab45efd548bc8d276dbf89c) - **AutoML**: changed file structure visualization in AutoML usage docs for CLI *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b4048dc`](https://github.com/frankkramer-lab/aucmedi/commit/b4048dc9f595f8e0722139d64265220091a87fa2) - **Examples**: updated docs for examples *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1be3a93`](https://github.com/frankkramer-lab/aucmedi/commit/1be3a93e8ea0c63023821fe4b69da7fc1e847ffb) - **AutoML**: added documentation for AutoML API reference *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3593d79`](https://github.com/frankkramer-lab/aucmedi/commit/3593d7916f7b538ff864535287f9e5c02d52b409) - **Roadmap**: checked AutoML docs as milestone on roadmap *(commit by [muellerdo](https://github.com/muellerdo))*
- [`fe557d1`](https://github.com/frankkramer-lab/aucmedi/commit/fe557d1d1dfc2c2dd3d6be7ab22f79403d0e62a4) - **IO_Loader**: fixed mapping of io loader to description in table *(commit by [muellerdo](https://github.com/muellerdo))*

:construction_worker: Build System
- [`bc2104f`](https://github.com/frankkramer-lab/aucmedi/commit/bc2104f4ead0939f7845b744aaf24106d80ff0a6) - **Unittesting**: Renamed GitHub Action workflow for package building *(commit by [muellerdo](https://github.com/muellerdo))*
- [`bc34d09`](https://github.com/frankkramer-lab/aucmedi/commit/bc34d09327f87350419a725a066e5987ec3c5d0d) - **Code-Quality**: Refactored code coverage GitHub Action workflow *(commit by [muellerdo](https://github.com/muellerdo))*
- [`34bde90`](https://github.com/frankkramer-lab/aucmedi/commit/34bde90eeeeda28e11d88342243d82dff5c7ee6c) - **Code-Quality**: Added GitHub Action commitlint for commit convention checking *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f226d89`](https://github.com/frankkramer-lab/aucmedi/commit/f226d89eab2e435917a812d899bc20dca9de480e) - **Code-Quality**: currently disabling commitlint *(commit by [muellerdo](https://github.com/muellerdo))*
- [`43f6c8a`](https://github.com/frankkramer-lab/aucmedi/commit/43f6c8a25dfb4a34d5809e6e466889c33e7fa4a5) - **Code-Quality**: added configuration file for commitlint *(commit by [muellerdo](https://github.com/muellerdo))*
- [`67c6d9b`](https://github.com/frankkramer-lab/aucmedi/commit/67c6d9b04ee1a28fde6e6a698999fd585fc977c5) - Updated to version 0.6.1 for Zenodo release *(commit by [muellerdo](https://github.com/muellerdo))*

:sparkles: New Features
- [`de02965`](https://github.com/frankkramer-lab/aucmedi/commit/de02965f247c044912adff49960711ab3ad966e4) - **Bagging**: Implemented training process for Bagging (also closes [#121](https://github.com/frankkramer-lab/aucmedi/pull/121)) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c7cbc8e`](https://github.com/frankkramer-lab/aucmedi/commit/c7cbc8e47922be2bd8077410d231a3ab60cf430a) - **Bagging**: Implemented Bagging training in separate Processes to avoid any garbage collection issues *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c9ed177`](https://github.com/frankkramer-lab/aucmedi/commit/c9ed17714c9daf9985c5b5cb5e7e4800ed1ce844) - **Bagging**: Implemented Bagging inference functionality *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f78bba3`](https://github.com/frankkramer-lab/aucmedi/commit/f78bba35c4382dba8f7594d4cdeca1430c82a9cf) - **Bagging**: Implemented Bagging dump (result storage) functionality *(commit by [muellerdo](https://github.com/muellerdo))*
- [`41c4114`](https://github.com/frankkramer-lab/aucmedi/commit/41c41147526b7ca68060a6c7f9bad0c1ee8f37ac) - **Bagging**: Implemented Bagging load (re-using result directory) functionality *(commit by [muellerdo](https://github.com/muellerdo))*
- [`7014130`](https://github.com/frankkramer-lab/aucmedi/commit/7014130c1ecca791e42b439b7f1a617399ac5e69) - **Metalearner**: Started working on Metalearners for later usage in Stacking *(commit by [muellerdo](https://github.com/muellerdo))*
- [`cdf9f54`](https://github.com/frankkramer-lab/aucmedi/commit/cdf9f545ff5c39c3b10745581b93d9bc3fe12344) - **Metalearner**: Implemented abstract base class for Metalearner *(commit by [muellerdo](https://github.com/muellerdo))*
- [`168116f`](https://github.com/frankkramer-lab/aucmedi/commit/168116f30787aa1e428878cd3ab892ba7d49ce54) - **Stacking**: Implemented ensemble learning technique Stacking *(commit by [muellerdo](https://github.com/muellerdo))*
- [`633af82`](https://github.com/frankkramer-lab/aucmedi/commit/633af82288023810a98196c036275d613cced366) - **Metalearner**: Implemented Metalearner Logistic Regression *(commit by [muellerdo](https://github.com/muellerdo))*
- [`726c6f2`](https://github.com/frankkramer-lab/aucmedi/commit/726c6f2e30b539236fff87315800a39904944e74) - **Metalearner**: Implemented Metalearner: Naive Bayes *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b7d5548`](https://github.com/frankkramer-lab/aucmedi/commit/b7d5548ac74b8e1e5cd74950b0c8354d503491a7) - **Metalearner**: Added Metalearner Support Vector Machine *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d07b12d`](https://github.com/frankkramer-lab/aucmedi/commit/d07b12d317847adb8ee0253435c399298b4f3af7) - **Metalearner**: Added Metalearner Gaussian Process *(commit by [muellerdo](https://github.com/muellerdo))*
- [`85b861b`](https://github.com/frankkramer-lab/aucmedi/commit/85b861bcc4694eb74821437c60e51f33973f62f3) - **Metalearner**: Added Metalearner Decision Tree *(commit by [muellerdo](https://github.com/muellerdo))*
- [`54d6f4e`](https://github.com/frankkramer-lab/aucmedi/commit/54d6f4e380bf096f034bd84717f4ad1db47c9595) - **Metalearner**: Added Metalearner Best Model *(commit by [muellerdo](https://github.com/muellerdo))*
- [`162b977`](https://github.com/frankkramer-lab/aucmedi/commit/162b97763d9972692b00a4e00a6c0e5197e26e73) - **Metalearner**: Added Metalearner Weighted Mean *(commit by [muellerdo](https://github.com/muellerdo))*
- [`be429f6`](https://github.com/frankkramer-lab/aucmedi/commit/be429f655586de1fb6652fe338d3e464f17d2119) - **Metalearner**: Added Random Forest - Contributes to [#129](https://github.com/frankkramer-lab/aucmedi/pull/129) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`817e02d`](https://github.com/frankkramer-lab/aucmedi/commit/817e02d5af54020e79e2d796469676cceb5c5ae9) - **Metalearner**: Added k-Nearest Neighbors - Contributes to [#129](https://github.com/frankkramer-lab/aucmedi/pull/129) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b66de88`](https://github.com/frankkramer-lab/aucmedi/commit/b66de883f574f7ed8fe232931cfaa51d429b51e7) - **Metalearner**: Added MLP Neural Network - Contributes to [#129](https://github.com/frankkramer-lab/aucmedi/pull/129) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`205dd12`](https://github.com/frankkramer-lab/aucmedi/commit/205dd12d588f7bd00f076208116eb5581a958e08) - **Aggregate**: Added Global Argmax - Contributes to [#129](https://github.com/frankkramer-lab/aucmedi/pull/129) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`09d4b13`](https://github.com/frankkramer-lab/aucmedi/commit/09d4b13090ef3e31354f952c7afcfcb03b648b3f) - **Classifier**: Removed two_dim parameter from Classifier *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2c8f13a`](https://github.com/frankkramer-lab/aucmedi/commit/2c8f13ab7e3d5ca63929b6a3ca654abd0ec3a1d7) - **Architectures**: Started working on Vision Transformer *(commit by [muellerdo](https://github.com/muellerdo))*
- [`33068ac`](https://github.com/frankkramer-lab/aucmedi/commit/33068acc08f005555786a1adcc3bdf72aac05954) - **Architectures**: Implemented Vision Transformer Architecture *(commit by [muellerdo](https://github.com/muellerdo))*
- [`32a43d1`](https://github.com/frankkramer-lab/aucmedi/commit/32a43d1787d3b75b7bc39f342a43b8ef764c906d) - **Utils**: Added utility function for parsing CSVLogger fitting file to fitting dictionary *(commit by [muellerdo](https://github.com/muellerdo))*
- [`da69ac2`](https://github.com/frankkramer-lab/aucmedi/commit/da69ac2daf1eaf11317ce1d661a92502e4919ece) - **Evaluation**: Implemented fitting curve plotting *(commit by [muellerdo](https://github.com/muellerdo))*
- [`393274f`](https://github.com/frankkramer-lab/aucmedi/commit/393274f999df894ea1f8c19bced6a05946da4481) - **Evaluation**: Started implementing performance evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2962aa3`](https://github.com/frankkramer-lab/aucmedi/commit/2962aa38fd4d48b0086d6258388ab4719212a556) - **Evaluation**: Fully implemented performance evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1c80fdd`](https://github.com/frankkramer-lab/aucmedi/commit/1c80fddb11f8429bcd310a76d5c4601dc6f6b4f1) - **Evaluation**: Added unittesting for performance evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0cdc6bd`](https://github.com/frankkramer-lab/aucmedi/commit/0cdc6bd68b447c9e2f866285ac160cf359981471) - **Evaluation**: Implemented comparison evaluation function *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4f90c5c`](https://github.com/frankkramer-lab/aucmedi/commit/4f90c5c50c06346e2b36685d894941471d0e96d7) - **Ensemble**: Added return_ensemble feature for Stacking and Bagging predictions. *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c2c1a33`](https://github.com/frankkramer-lab/aucmedi/commit/c2c1a339df5f6eb9e4903ac555ac4692cf94f2d1) - **Evaluation**: Added returning merged and gain dataframe in Comparison Evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8da7c53`](https://github.com/frankkramer-lab/aucmedi/commit/8da7c5384be2dca6a8a2b871a1fe1d70e4f8041c) - **Evaluation**: Added dataset analysis evaluation function *(commit by [muellerdo](https://github.com/muellerdo))*

:bug: Bug Fixes
- [`d764ff9`](https://github.com/frankkramer-lab/aucmedi/commit/d764ff9a7e6141e37aa548d4575ae6abc872cb57) - **Bagging**: Force setting multiprocessing start option which solves multi-assignment *(commit by [muellerdo](https://github.com/muellerdo))*
- [`00cefe4`](https://github.com/frankkramer-lab/aucmedi/commit/00cefe46522370cbccc8395d26708850b7b8382c) - **Bagging**: Removed unittests for deprecated model_list variable in Bagging initialization *(commit by [muellerdo](https://github.com/muellerdo))*
- [`275b0b8`](https://github.com/frankkramer-lab/aucmedi/commit/275b0b8419565b76cbde546866b8542309284607) - **Bagging**: Fixed incorrect DataGenerator parameter mapping in predict function *(commit by [muellerdo](https://github.com/muellerdo))*
- [`72794df`](https://github.com/frankkramer-lab/aucmedi/commit/72794df1f8265e4d08d666def492741302808599) - **Metalearner**: Fixed postprocessing of Decision Tree prediction *(commit by [muellerdo](https://github.com/muellerdo))*
- [`546c07b`](https://github.com/frankkramer-lab/aucmedi/commit/546c07be5b8c02c8c6662ded0e1f54e62c98399b) - **Website**: Fixed 'funky' first item on landing page - Closes [#106](https://github.com/frankkramer-lab/aucmedi/pull/106) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2584e78`](https://github.com/frankkramer-lab/aucmedi/commit/2584e78fae1408e5f90066c9b01e9a71c2d5afff) - **Website**: Hotfix of new introduced bug with previous commit *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e44916b`](https://github.com/frankkramer-lab/aucmedi/commit/e44916b5d5d440735e10ecac893d16a06a765bc7) - **Architectures**: Fixed incorrect input shapes for B16 and B32 Vision Transformer Architecture *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1b554cc`](https://github.com/frankkramer-lab/aucmedi/commit/1b554cc87a59e8c3497f8ab76eb6d60345c70637) - **Evaluation**: Fixed suffix=None usage in evaluate_fitting() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c8ce20d`](https://github.com/frankkramer-lab/aucmedi/commit/c8ce20d71399c7868b74b5debe0df435e9f249a7) - **Classifier**: Removed deprecated two_dim parameter from unittesting *(commit by [muellerdo](https://github.com/muellerdo))*

:zap: Performance Improvements
- [`c5d3131`](https://github.com/frankkramer-lab/aucmedi/commit/c5d3131f79886d4000977108bcfbfb3984575e86) - **DataGenerator**: Enhanced temporary dictionary management for prepare_images - Closes [#120](https://github.com/frankkramer-lab/aucmedi/pull/120), [#10](https://github.com/frankkramer-lab/aucmedi/pull/10) *(commit by [muellerdo](https://github.com/muellerdo))*

:recycle: Refactors
- [`2e25ddb`](https://github.com/frankkramer-lab/aucmedi/commit/2e25ddb84b2604a783ce3cfaac694318e37e8222) - **Bagging**: Removed redundant deepcopy module dependency *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8e3eaae`](https://github.com/frankkramer-lab/aucmedi/commit/8e3eaae05425a91672c6cb6f38cd7720de9df76b) - **Metalearner**: Changed Metalearner training and prediction function to train() and predict() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d3488ca`](https://github.com/frankkramer-lab/aucmedi/commit/d3488ca3baef4f32aefc44281436313dcc34a80c) - **Evaluation**: Removed redundant plot submodule file *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0a417d7`](https://github.com/frankkramer-lab/aucmedi/commit/0a417d7ae79dc50c77464075804f1e439c2669d4) - Remove inconsistency of class naming (now following PEP8) - Closes [#138](https://github.com/frankkramer-lab/aucmedi/pull/138) *(commit by [muellerdo](https://github.com/muellerdo))*

:white_check_mark: Tests
- [`e87c8e9`](https://github.com/frankkramer-lab/aucmedi/commit/e87c8e9f3f3b53aa8d7f92287f67785cdd299290) - **Bagging**: Implemented unittesting for Bagging training and inference *(commit by [muellerdo](https://github.com/muellerdo))*
- [`2110666`](https://github.com/frankkramer-lab/aucmedi/commit/21106668b0365d53afffbc9440e3957903f5021a) - **Bagging**: Implemented unittesting for Bagging dump() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`efbc889`](https://github.com/frankkramer-lab/aucmedi/commit/efbc8895dd96ac8487cfec65eec613e734c5d528) - **Bagging**: Implemented unittesting for Bagging load function *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1e7056e`](https://github.com/frankkramer-lab/aucmedi/commit/1e7056e2ae7a5f6c99cd62e15ee0f1bed5119bbc) - **Stacking**: Added unittesting for Stacking *(commit by [muellerdo](https://github.com/muellerdo))*
- [`decde32`](https://github.com/frankkramer-lab/aucmedi/commit/decde329ed8f9bb34e061289840e414821603cf8) - **Metalearner**: Added unittesting for Metalearners - Closes [#127](https://github.com/frankkramer-lab/aucmedi/pull/127) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`ddc6ef0`](https://github.com/frankkramer-lab/aucmedi/commit/ddc6ef0b6fbc2e03c30571d0293b2d3a147c2138) - **Aggregate**: Added unittesting for Global Argmax *(commit by [muellerdo](https://github.com/muellerdo))*
- [`384334d`](https://github.com/frankkramer-lab/aucmedi/commit/384334d58e763aa822e55d97fa310948ed5f42f2) - **Architectures**: Added unittesting for Vision Transformer *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0fb98a2`](https://github.com/frankkramer-lab/aucmedi/commit/0fb98a24cc18009a27c635e0f0c10934f0e5eae6) - **Utils**: Added unittesting for csv2history *(commit by [muellerdo](https://github.com/muellerdo))*
- [`182774c`](https://github.com/frankkramer-lab/aucmedi/commit/182774c8bb4a09b08eab923a2c0695030cd2df69) - **Evaluation**: Implemented unittesting for fitting curve plotting *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b66bab7`](https://github.com/frankkramer-lab/aucmedi/commit/b66bab7dd676cee82a2cc25bb21fae774a400629) - **Evaluation**: Implemented unittesting for evaluate_comparison() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d6fd5f3`](https://github.com/frankkramer-lab/aucmedi/commit/d6fd5f39e7c8f9090c7d4e8568f3f55028cb4f96) - **Evaluation**: Implemented unittesting for evaluate_dataset() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`da49ee3`](https://github.com/frankkramer-lab/aucmedi/commit/da49ee39099210823fc8eb6ce3e8a42c6f3352e6) - **Evaluation**: Implemented unittesting for evaluate_dataset() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`1b9031e`](https://github.com/frankkramer-lab/aucmedi/commit/1b9031ef0450c5730e18f77d128c1c76fc0d087e) - **Architectures**: Removed ViT architecture testing due to too heavy RAM requirements *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4524b30`](https://github.com/frankkramer-lab/aucmedi/commit/4524b30cfcd7a621fd8353a375fe0b1a9c3ccd1d) - **Neural_Network**: Added unittesting for model.predict() *(commit by [muellerdo](https://github.com/muellerdo))*

:construction_worker: Build System
- [`1f38ce5`](https://github.com/frankkramer-lab/aucmedi/commit/1f38ce5b47f31fba95bf6dad3cec154d059fda5a) - **Architectures**: Added module dependency vit-keras *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4b6c89c`](https://github.com/frankkramer-lab/aucmedi/commit/4b6c89c186025ae919290c5c88bcf4a5f3f64bcf) - **Evaluation**: Added plotnine module dependency *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3376920`](https://github.com/frankkramer-lab/aucmedi/commit/33769202cc5176a9d5cdad9a9bb0af5b6e0dc756) - **Architectures**: Added Tensorflow Addons as dependency for ViT Architecture *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d0544a3`](https://github.com/frankkramer-lab/aucmedi/commit/d0544a38e5ae29a3d49d944d71c057055bde8b65) - **Requirements**: Set minimum and debugging version of Tensorflow Addons to 0.16.1 *(commit by [muellerdo](https://github.com/muellerdo))*
- [`686efc9`](https://github.com/frankkramer-lab/aucmedi/commit/686efc971b399a0787d741935a709b4745957564) - **Tensorflow**: Added fixed version of protobuf to requirement dependencies due to global major release break *(commit by [muellerdo](https://github.com/muellerdo))*
- [`b85e23a`](https://github.com/frankkramer-lab/aucmedi/commit/b85e23a9dbd8c039632c14696897ccd41da11e1d) - **Release**: Added automatic CHANGELOG creation - Closes [#113](https://github.com/frankkramer-lab/aucmedi/pull/113) *(commit by [muellerdo](https://github.com/muellerdo))*

:memo: Documentation Changes
- [`6d2bb95`](https://github.com/frankkramer-lab/aucmedi/commit/6d2bb95c22de0f12178eb099b2b3d41e5d7b44ab) - **Neural_Network**: Fixed a variable type in parameter documentation of train() - integer to int *(commit by [muellerdo](https://github.com/muellerdo))*
- [`532a688`](https://github.com/frankkramer-lab/aucmedi/commit/532a688f8087d178639206aefe1189a2e109847f) - **Augmenting**: Added reference to ENSMIC publication *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c8230a4`](https://github.com/frankkramer-lab/aucmedi/commit/c8230a433c486924caa485b1ae440bda89216326) - **Bagging**: Added complete documentation for the Bagging class *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3d7a749`](https://github.com/frankkramer-lab/aucmedi/commit/3d7a749af4c859d84ccb62a9e12743ef637fe432) - **Ensemble**: Added theory figure for visualization from the ENSMIC publication *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c984578`](https://github.com/frankkramer-lab/aucmedi/commit/c984578c33acf11aaded76d69d29e4a0f4f2db19) - **Aggregate**: Replaced N_cycles in documentation example of Aggregate functions to N_models *(commit by [muellerdo](https://github.com/muellerdo))*
- [`00cbdf1`](https://github.com/frankkramer-lab/aucmedi/commit/00cbdf156caf1db33c49d13c71aa8c9136fb6852) - **Bagging**: Removed a misleading statement in the training function docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`484178a`](https://github.com/frankkramer-lab/aucmedi/commit/484178a29dc102f9bbec13de9d5aeb652b7b495c) - **Metalearner**: Enhanced specification of Metalearner ABC for training *(commit by [muellerdo](https://github.com/muellerdo))*
- [`511154b`](https://github.com/frankkramer-lab/aucmedi/commit/511154b23ac12ffec67f057813424d2c6df09594) - Corrected multiple old data type annotations of Boolean to bool *(commit by [muellerdo](https://github.com/muellerdo))*
- [`9a66925`](https://github.com/frankkramer-lab/aucmedi/commit/9a66925cf3aaa40f47b26881e20d01e000cb435f) - **Stacking**: Added example for Stacking *(commit by [muellerdo](https://github.com/muellerdo))*
- [`9daf42d`](https://github.com/frankkramer-lab/aucmedi/commit/9daf42d72633e6c51a0a8beb9fa35a33c27065da) - **Ensemble**: Some docs enhancements *(commit by [muellerdo](https://github.com/muellerdo))*
- [`737b40a`](https://github.com/frankkramer-lab/aucmedi/commit/737b40aba4364509c930a891615bf38b967acf6f) - **Metalearner**: Some docs enhancements in Metalearner ABC *(commit by [muellerdo](https://github.com/muellerdo))*
- [`66dedc6`](https://github.com/frankkramer-lab/aucmedi/commit/66dedc6818f3a11d7bb0da4191f5627b58c01606) - **Roadmap**: Updated roadmap status by Bagging & Stacking *(commit by [muellerdo](https://github.com/muellerdo))*
- [`fedac2d`](https://github.com/frankkramer-lab/aucmedi/commit/fedac2d6766bdad2afc0f673ff037606d033de48) - **Metalearner**: Added references to scikit-learn in Metalearner implementations *(commit by [muellerdo](https://github.com/muellerdo))*
- [`4c7643f`](https://github.com/frankkramer-lab/aucmedi/commit/4c7643fd9afe63b316731d2c48ff7179f5f5d123) - **Ensemble**: Some upper/lower case changes in docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6f50f1c`](https://github.com/frankkramer-lab/aucmedi/commit/6f50f1cb429e656889c3018b76fd173cce96f300) - **Aggregate**: Standardized starting upper case of Aggregate *(commit by [muellerdo](https://github.com/muellerdo))*
- [`e744d10`](https://github.com/frankkramer-lab/aucmedi/commit/e744d10782873e15bf13314363dffd6f805cc56a) - **Website**: Added AUCMEDI version to Application table - Closes [#115](https://github.com/frankkramer-lab/aucmedi/pull/115) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`5175715`](https://github.com/frankkramer-lab/aucmedi/commit/5175715c5d3e5fb5e087b2abcd91d00821abf930) - **Website**: Added third container for landing page *(commit by [muellerdo](https://github.com/muellerdo))*
- [`621179d`](https://github.com/frankkramer-lab/aucmedi/commit/621179dc133012fde4b1eea1006ce118c8c6a913) - **ensemble**: proofreading *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`2fb7510`](https://github.com/frankkramer-lab/aucmedi/commit/2fb75103743e80737e5abdc8832553a63fbdf3e9) - **ensemble**: add feedback *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`2200ed3`](https://github.com/frankkramer-lab/aucmedi/commit/2200ed33cdf927e177f57fe9f0dbb1026fdb3e0a) - Renamed datatype dictionary to dict *(commit by [muellerdo](https://github.com/muellerdo))*
- [`630c5ab`](https://github.com/frankkramer-lab/aucmedi/commit/630c5abd9bb024bba03ce016074e676aa862e679) - **Utility**: Fixed some documentation in csv2dict unittesting *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6c5d648`](https://github.com/frankkramer-lab/aucmedi/commit/6c5d648689bdc6ef9cecfcc0e02fe131ef5ebccd) - **Evaluation**: Added docs for Fitting Plot *(commit by [muellerdo](https://github.com/muellerdo))*
- [`6b242cc`](https://github.com/frankkramer-lab/aucmedi/commit/6b242ccebabe559fbd7eb6b5c3ceeffa53781b46) - **Evaluation**: Added preview image to evaluate_fitting() docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`ac9dc8f`](https://github.com/frankkramer-lab/aucmedi/commit/ac9dc8f9faac458d035d4ff38e396b08bff4e26e) - **sampling**: fix typo *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`d5de35b`](https://github.com/frankkramer-lab/aucmedi/commit/d5de35baeb2f00b74374c79ba8a73a147db89290) - **augmentation**: fix typo *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`0c3f1fc`](https://github.com/frankkramer-lab/aucmedi/commit/0c3f1fcb3275f516e7bbcb2333abcc0ecfffae58) - **Evaluation**: Added preview figures for performance evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`0811f99`](https://github.com/frankkramer-lab/aucmedi/commit/0811f990a074825837eaae0b1cf75408f669d189) - **README**: Increased WiP time from June to July *(commit by [muellerdo](https://github.com/muellerdo))*
- [`76414d3`](https://github.com/frankkramer-lab/aucmedi/commit/76414d354569017b3d9f8d6926bf0e5dbf0264b5) - **Evaluation**: Added docstrings and other documentation for metrics submodule *(commit by [muellerdo](https://github.com/muellerdo))*
- [`da6af2b`](https://github.com/frankkramer-lab/aucmedi/commit/da6af2b895daa86ed5840163b387bebc985336d6) - **Ensemble**: Fixed an incorrect cross-reference to Aggregate in Augmenting *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8021ab1`](https://github.com/frankkramer-lab/aucmedi/commit/8021ab175b0e1635ad8b1e80a549b2837d840ed8) - **Evaluation**: Fixed incorrect example comment in Performance Evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f0e9678`](https://github.com/frankkramer-lab/aucmedi/commit/f0e96784ba096dcde9d5a87aac3b695eb881b205) - **Evaluation**: Added full documentation for Comparison Evaluation *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c9be124`](https://github.com/frankkramer-lab/aucmedi/commit/c9be124abc1814b408d045d3d8601f4dc9c42f09) - **Evaluation**: Added missing preview figures for evaluate_comparison() docs *(commit by [muellerdo](https://github.com/muellerdo))*
- [`206868a`](https://github.com/frankkramer-lab/aucmedi/commit/206868ac5a3d5811de0d8363c3a3a088e1c2af51) - **model**: fix small typos and improve architecture description *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`30bb4c0`](https://github.com/frankkramer-lab/aucmedi/commit/30bb4c0c53279ca897cfedd9c2ba4ac09a1099eb) - **architectures**: fix typo *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`ad31bbc`](https://github.com/frankkramer-lab/aucmedi/commit/ad31bbca39dda012b5fc6a3b6fd84fb0b1a47af5) - **Logo**: Added logo for AUCMEDI - Closes [#73](https://github.com/frankkramer-lab/aucmedi/pull/73) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`f6f4814`](https://github.com/frankkramer-lab/aucmedi/commit/f6f48149196f1df0a874ec1fb539a4438b1da6b9) - **Logo**: Added new logo with description to README *(commit by [muellerdo](https://github.com/muellerdo))*
- [`ca7fc89`](https://github.com/frankkramer-lab/aucmedi/commit/ca7fc89fe665708cf289d0c6c6c5d6cfd328a69d) - **model**: improve transfer learning documentation *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`2d59bdc`](https://github.com/frankkramer-lab/aucmedi/commit/2d59bdcfdd5aec23abf4a187309cd4eaa3d26bb1) - **Website**: Integrated inverse description logo of AUCMEDI into landing page *(commit by [muellerdo](https://github.com/muellerdo))*
- [`c5294c4`](https://github.com/frankkramer-lab/aucmedi/commit/c5294c42dda3eebd2f82cc58994a7180b4832040) - **model**: fix typo *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`b4078a1`](https://github.com/frankkramer-lab/aucmedi/commit/b4078a14e4d10a946bae63aa804dfc05c9136450) - **Website**: Fixed a website container layout issue for About_Us section *(commit by [muellerdo](https://github.com/muellerdo))*
- [`698380a`](https://github.com/frankkramer-lab/aucmedi/commit/698380a91b882732f99bacf92ace18fd0aa39c7e) - **Website**: Added logo to introduction page in website *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d2c7ffe`](https://github.com/frankkramer-lab/aucmedi/commit/d2c7ffe1fa68c06b91f9da109794d0b9e3ae6ba9) - **Evaluation**: Implemented docs for evaluate_dataset() *(commit by [muellerdo](https://github.com/muellerdo))*
- [`666e664`](https://github.com/frankkramer-lab/aucmedi/commit/666e664c87d46391c4814d1d5ccdf8663bcc7606) - **Evaluation**: Added docs with overview for evaluation submodule *(commit by [muellerdo](https://github.com/muellerdo))*
- [`3401f1c`](https://github.com/frankkramer-lab/aucmedi/commit/3401f1c963732eadd66e101e9a9e44c0fda734c6) - **Website**: Increased width of landing page overview visualization *(commit by [muellerdo](https://github.com/muellerdo))*
- [`8afc183`](https://github.com/frankkramer-lab/aucmedi/commit/8afc183a8e41a5afc9564098b3cf05efdb14cedd) - **Website**: Added landing page figure *(commit by [muellerdo](https://github.com/muellerdo))*
- [`80ffb96`](https://github.com/frankkramer-lab/aucmedi/commit/80ffb96e46dab832de2a02b0df76c484301f08ef) - **evaluation**: proofreading *(commit by [SherlockMones](https://github.com/SherlockMones))*
- [`cb4b718`](https://github.com/frankkramer-lab/aucmedi/commit/cb4b7183e3a334f6dfd178963aa5b6f52046baf6) - **Website**: Updated overview figure on landing page of Website *(commit by [muellerdo](https://github.com/muellerdo))*
- [`d545703`](https://github.com/frankkramer-lab/aucmedi/commit/d54570381a842ca76705934b70b3e68fb078b423) - **Website**: Improved contribution guidelines - Closes [#125](https://github.com/frankkramer-lab/aucmedi/pull/125) *(commit by [muellerdo](https://github.com/muellerdo))*
- [`ec0ae9d`](https://github.com/frankkramer-lab/aucmedi/commit/ec0ae9dd4f982e766861e77cd68404591dd6e453) - **Website**: Changed roadmap milestones *(commit by [muellerdo](https://github.com/muellerdo))*

:wrench: Chores
- [`20217ad`](https://github.com/frankkramer-lab/aucmedi/commit/20217adb8e53db4b22797397c230e4f434912c8f) - **Classifier**: Removed the two_dim parameter in all Classifier.build() calls *(commit by [muellerdo](https://github.com/muellerdo))*
- [`9cf93d2`](https://github.com/frankkramer-lab/aucmedi/commit/9cf93d2977683c8419b86951d77ebfcbbc04441e) - **Package**: Update to version 0.6.0 *(commit by [muellerdo](https://github.com/muellerdo))*

:boom: BREAKING CHANGES
- due to [`0a417d7`](https://github.com/frankkramer-lab/aucmedi/commit/0a417d7ae79dc50c77464075804f1e439c2669d4) - Remove inconsistency of class naming (now following PEP8) - Closes [#138](https://github.com/frankkramer-lab/aucmedi/pull/138) *(commit by [muellerdo](https://github.com/muellerdo))*:

Remove inconsistency of class naming (now following PEP8) - Closes 138

Fixed metadata support for Augmenting.

Fixing automatic PyPI publish Action at release.