Bio-check

Latest version: v1.4.0

Safety actively analyzes 682387 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

1.4.0

_What's included?:_
- Update of `truth` and `ground_truth` iterations to instead be declared as `expected_results`.
- Fix to OMEX/COMBINE archive passed with SEDML to use `kisao.AlgorithmSubstitutionPolicy.SAME_FRAMEWORK` to prevent hybrid solver execution on otherwise "pure" ODE models.
- Updated hue configuration for `Verifier` visualization methods to reader-friendly values.
- Refactored documentations/demos and README content.
- Bug fixes as needed.

1.3.0

_**What's new in this release?**_:
- Implementation of `rmse` for each simulator in a given comparison.
- Added a `Verifier().get_compatible()` method for informative call for usable simulators.
- Added a `truth` keyword argument for SBML simulation verifications for ground truth passing.
- Implemented the ability to parse Antimony to SBML within a given simulation submission.
- Bug fixes as needed.

1.2.0

**What's included:**
- Adds `export_csv` method to `bio_check.verifier.Verifier()` for observables output generated from `Verifier().get_verify_output()`.
- Adds two forms of visualization to `Verifier()`: `visualize_outputs()` and `visualize_comparison()`.
- Bug fixes for SBML request handling.
- Polling timer update for internal methods.
- Other updates as needed.

1.1.0

**What's included in this pre-release:**
- Changes the primary tooling object filename and class name in `bio_check` to `verifier` and `Verifier` respectively.
- Enhanced versions of `Verifier` instance methods such as `export_to_csv()` and `visualize()`. (Not yet implemented)
- Introduces a more formalized testing stack with both `ci.yaml` and `cd.yaml` within a Github Actions configuration.

Links

Releases

Has known vulnerabilities

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.