Biolinkml

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* Automated adding outputs from tests
* Add the context generator back to the unit test
* Add proposed case insensitivity to prefix handling
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Update the Python comparator to correctly test the generated code
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Update resolver3.json
* Update of the documentation
* Major update to the generated Python
* Sync with the latest biolink model for testing
* Automated adding outputs from tests
* Fixed 290
* made test case for 290, fails as expected for now
* added test for 290

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* Automated adding outputs from tests
* Fixes for issues 281 and 282
* Automated adding outputs from tests
* Accidentally picked up some WIP from another branch. Pared down to just this issue
* Fixed issue 276. Tightened up the YAML importer to fail on empty list elements
* Automated adding outputs from tests
* Checkpoint on pattern branch

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* Automated adding outputs from tests
* Changed the type of subproperty\_of to SlotDefinition
* Add a more informative error message when you feed the loader an empty file. Change the syntax of the yaml error message so that JetBrains IDE's can find the file and line
* Correct a couple of errors on generating the new slot
* Attributes introduced to metamodel
* Automated adding outputs from tests
* Add new output directory
* Add the test case input
* Fix for issue 260
* Automated adding outputs from tests
* adding users
* Automated adding outputs from tests

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* Partial fix for issue 258. Set model version to 1.5.8, next PyPi addition
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Final fix for issue 168
* Automated update to docs with GitHub Actions
* Fix issue 213
* Add test for issue 213 (fixed elsewhere)
* Automated adding outputs from tests
* Multiple fixes -- will add issue numbers to pull request
* Centralize header metadata function. Note: This should eliminate the need for a lot of the test filters. Add a list of known generators to \_\_init\_\_.py to allow iteration Add a "directory\_output" to generators that emit directories (dotgen, golrgen, markdowngen) Change default output type of context generator from "json" to "context" to prevent clashes with jsonldcontextgen.py Couple of small tweaks in the test\_environment to keep output of multi-test Add minimal model test to tccm\_issues tests and a batch generator to make sure that the minimal model works in all generators
* Automated adding outputs from tests
* Import any identifier / key slots that are defined in another module
* Fixes issue in merge where mappings aren't always correctly inherited
* Automated adding outputs from tests
* Update yamlgen.py
* Update README.md
* Added gen-yaml command line tool for validating and emitting complete YAML
* Added gen-yaml command line tool for validating and emitting complete YAML
* Tighten up URI and CURIE instance testing
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Update test\_gen\_jsonld.py
* Automated adding outputs from tests

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* Automated adding outputs from tests
* Fix problem where slot\_usage slots used as inline definitions don't emit actual slots
* Add a tccm test case for addressing issues found in tccm development
* Comment out an integrity test that is failing under certain conditions
* Change the default default\_range message to a logger info to clean up the output
* Correct typo in API
* Add an command line/runtime option to control import merges
* Update to reflect the latest greatest biolink model
* Fix issue 222
* 223 remove temp and \_\_pycache\_\_ directories in tests
* Automated adding outputs from tests
* 223 fix the issue that git add --force added too many files in tests
* Update README.md
* Automated adding outputs from tests
* Fix an annoying issue where the genrdf test\_scripts output keeps getting replaced
* Fix an annoying issue w/ the examples.txt output where it keeps getting updated
* Additional input for issue 101
* link to pipenv (for neophytes)
* Automated adding outputs from tests
* tiny typo
* adding more mappings slots to parallel skos

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* Automated adding outputs from tests
* Fix for Issue 102
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Update to the w3id rewrite rules to include extensions and annotations
* Reset to use the master import map
* Automated adding outputs from tests
* Temporarily set the local import map to True to get pushed to master
* First cut at fixing issue 167 and 126
* First cut at fixing issue 167 and 126
* Add OIO to prefixes that need emitting
* Fix an issue where aliases were incorrectly reported as errors
* Add annotations as a specialization of extension
* Process inline range classes as wither a list of dictionaries or, if two attributes, a key/value tuple
* Fix a couple of issues with slot specialization (slot\_usage)
* Stop using is\_usage\_slot (it is deprecated and will be removed) and switch to usage\_slot\_name
* Don't assume that subproperty\_of references a slot
* First cut at adding extensible to all elements
* Clean up an unresolved TODO in the import generator
* Automated adding outputs from tests
* Add --force to git add tests
* Automated adding outputs from tests
* Delete mappings.py
* Delete mappings.jsonld
* Delete mappings.context.jsonld
* Automated adding outputs from tests
* Fix Issue 106 --- whatever the issue was, it seems to have gone away..
* Automated adding outputs from tests
* Fix issue 141. (no idea when it got resolved but it works now...)
* Automated adding outputs from tests
* Fix problem where python issues were getting updated in output file
* Automated adding outputs from tests
* Fix Issue 202 -- re-enanabled the test against the web version
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Further output updates
* Issue 58 wasn't final
* Automated update to docs with GitHub Actions
* Automated adding outputs from tests
* Get the importmap integrated into all of the tooling
* Get the importmap integrated into all of the tooling
* Update on the directory compare function
* Fix Issue 201, 188 and 58
* Basic fix for issue 58 -- get the correct URI into the markdowngen.py
* Automated adding outputs from tests
* Issue 194. Use a local config file for test settings
* Automated adding outputs from tests
* Fix doc generation