Biomappings

Latest version: v0.3.7

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0.3.1

0.3.0

This release corresponds to the changes that go with the re-submission of the biomappings paper.

What's Changed
* Assess curation precision by cthoyt in https://github.com/biopragmatics/biomappings/pull/113
* Add sort by confidence to web app by cthoyt in https://github.com/biopragmatics/biomappings/pull/75
* Add epidemiology curation by cthoyt in https://github.com/biopragmatics/biomappings/pull/115
* Cleanup and update by cthoyt in https://github.com/biopragmatics/biomappings/pull/116
* Improve prediction linting by cthoyt in https://github.com/biopragmatics/biomappings/pull/118
* Propagate metadata from predictions into curated files by cthoyt in https://github.com/biopragmatics/biomappings/pull/117


**Full Changelog**: https://github.com/biopragmatics/biomappings/compare/v0.2.0...v0.3.0

0.2.0

This release prepares for the Biomappings paper submission (probably that no more curations are necessary before next release).

What's Changed
* Add predictions and curations for MeSH-ChEBI equivalences by bgyori in https://github.com/biopragmatics/biomappings/pull/70
* Predict DOID mappings to UMLS, MeSH, and EFO by cthoyt in https://github.com/biopragmatics/biomappings/pull/68
* Add more specific script URL for predictions by bgyori in https://github.com/biopragmatics/biomappings/pull/76
* Assorted DOID and ChEBI curations by cthoyt in https://github.com/biopragmatics/biomappings/pull/74
* Add manually curated PubChem-MeSH mappings by bgyori in https://github.com/biopragmatics/biomappings/pull/77
* Remove DOID mappings where primary mappings exist by bgyori in https://github.com/biopragmatics/biomappings/pull/79
* Remove more redundant predictions and curate some DOID mappings by bgyori in https://github.com/biopragmatics/biomappings/pull/80
* More manual DOID-MeSH curation by bgyori in https://github.com/biopragmatics/biomappings/pull/81
* Add UBERON-MeSH mappings by bgyori in https://github.com/biopragmatics/biomappings/pull/86
* Generate and curate a new set of MESH-CHEBI mappings by bgyori in https://github.com/biopragmatics/biomappings/pull/89
* Predict and curate CL-MESH mappings by bgyori in https://github.com/biopragmatics/biomappings/pull/91
* Miscellaneous curation by bgyori in https://github.com/biopragmatics/biomappings/pull/92
* More curations by bgyori in https://github.com/biopragmatics/biomappings/pull/93
* Curate MONDO-MeSH mappings by bgyori in https://github.com/biopragmatics/biomappings/pull/95
* Add AGRO-AGROVOC mappings by cthoyt in https://github.com/biopragmatics/biomappings/pull/83
* Curate AGRO-AGROVOC-Mappings by cthoyt in https://github.com/biopragmatics/biomappings/pull/97
* Add predicted WikiPathways orthologs by cthoyt in https://github.com/biopragmatics/biomappings/pull/59
* Additional curation and updates for bioregistry by cthoyt in https://github.com/biopragmatics/biomappings/pull/98
* Improve interface by cthoyt in https://github.com/biopragmatics/biomappings/pull/99
* Update MONDO local unique identifiers by cthoyt in https://github.com/biopragmatics/biomappings/pull/105
* Curate additional DOID-MESH mappings and contribute to DOID by bgyori in https://github.com/biopragmatics/biomappings/pull/104
* Some MeSH curations by bgyori in https://github.com/biopragmatics/biomappings/pull/107
* Add hetionet duplication and value added notebooks by cthoyt in https://github.com/biopragmatics/biomappings/pull/102
* Add project governance documentation by cthoyt in https://github.com/biopragmatics/biomappings/pull/106
* Fill out project skeleton by cthoyt in https://github.com/biopragmatics/biomappings/pull/108


**Full Changelog**: https://github.com/biopragmatics/biomappings/compare/v0.1.2...v0.2.0

0.1.2

- Improve curation interface
- Add new tools for generating predictions from PyOBO/Gilda
- Add additional curations for CCLE (thanks ALHoyt)
- Import ComPath
- Add APICURON upload

0.1.1

Fix picture in readme

0.1.0

- Refactor gilda predictions pipeline
- Add major curation of DOID-MeSH by ALHoyt

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