Brainreg-segment

Minor (but breaking) change
The directory created by `brainglobe-segmentation` has been renamed from `manual_segmentation` to `segmentation`. This reflects compatibility with automated segmentation plugins.

To use this version with data saved with previous versions, you can rename the directory to `segmentation` manually.

What's Changed
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/brainglobe-segmentation/pull/148
* Remove references to manual segmentation by adamltyson in https://github.com/brainglobe/brainglobe-segmentation/pull/150


**Full Changelog**: https://github.com/brainglobe/brainglobe-segmentation/compare/v1.0.1...v1.1.0

Minor dependency updates

Updates the package dependencies to be compliant with internal BrainGlobe changes and updates to external packages like napari and pandas.

What's Changed
* Update dependencies in line with 143 by willGraham01 in https://github.com/brainglobe/brainglobe-segmentation/pull/144


**Full Changelog**: https://github.com/brainglobe/brainglobe-segmentation/compare/v1.0.0...v1.0.1

This package is a renaming of the now-deprecated `brainreg-segment`.

Please use `brainglobe-segmentation` instead of the old `brainreg-segment` name. This package contains all the same functionality as `brainreg-segmentation`.

For more information, please see our [blog post](https://brainglobe.info/blog/version1/brainreg_update_live.html).

Users may want to uninstall `brainreg-segment` from their environments following this update. If you do so, please also consider doing the following if you make use of any other BrainGlobe tools:
- Update `brainreg` to at least version 1.0.0
- Update `cellfinder`
- Remove `brainreg-napari` from your machine - it now comes bundled with `brainreg` versions >=1.0.0.

What's Changed
* Rename to `brainglobe-segmentation` by willGraham01 in https://github.com/brainglobe/brainglobe-segmentation/pull/139


**Full Changelog**: https://github.com/brainglobe/brainglobe-segmentation/compare/v0.2.19...v1.0.0

This package is being renamed!

Please [use `brainglobe-segmentation`](https://github.com/brainglobe/brainglobe-segmentation) instead of the old `brainreg-segment` name. The functionality of this package it is no longer supported under the old name.

For more information, please see our [blog post](https://brainglobe.info/blog/version1/brainreg_update_live.html).

What's Changed
* Set pre-commit autoupdate frequency to monthly by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/128
* Delete .github/workflows/plugin_preview.yml by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/134
* Remove measurement code by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/135
* Migrate to npe2 by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/136
* Standardise use of atlas vs standard space by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/137
* Fix pandas FutureWarning by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/138
* Mark `brainreg-segment` package as deprecated in prep for renaming. by willGraham01 in https://github.com/brainglobe/brainreg-segment/pull/140

New Contributors
* willGraham01 made their first contribution in https://github.com/brainglobe/brainreg-segment/pull/140

**Full Changelog**: https://github.com/brainglobe/brainreg-segment/compare/v0.2.18...v0.2.19

What's Changed
* Update dependency (imlib -> brainglobe-utils) by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/109
* Add tooltips by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/104
* Warn user if data segmented in a different coordinate space by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/107
* Keyword args by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/108
* Refactor tests by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/115
* Add save option on analysis by adamltyson in https://github.com/brainglobe/brainreg-segment/pull/114


**Full Changelog**: https://github.com/brainglobe/brainreg-segment/compare/v0.2.17...v0.2.18