Brainstat

Commits
- aacd6ad: [TST] Add mixed effects to datagen and tests for linmod (171) (Reinder Vos de Wael) [171](https://github.com/MICA-MNI/BrainStat/pull/171)
- 5a44f1c: [TST, FIX] Mixed Effects models and SLM testing (174) (Reinder Vos de Wael) [174](https://github.com/MICA-MNI/BrainStat/pull/174)
- 455dd87: [TST] Added windows/macos unit tests (177) (Reinder Vos de Wael) [177](https://github.com/MICA-MNI/BrainStat/pull/177)
- 988e7f0: Fix unbound variable in SLM (179) (Reinder Vos de Wael) [179](https://github.com/MICA-MNI/BrainStat/pull/179)
- 4484de5: [GIT] Switch to PyPi (180) (Reinder Vos de Wael) [180](https://github.com/MICA-MNI/BrainStat/pull/180)
- 5bdea6f: [FIX] Fix pypi push (181) (Reinder Vos de Wael) [181](https://github.com/MICA-MNI/BrainStat/pull/181)
- c4c318a: [FIX] Fix PyPi push (182) (Reinder Vos de Wael) [182](https://github.com/MICA-MNI/BrainStat/pull/182)
- 6a6d905: [GIT] Make PyPi push verbose (183) (Reinder Vos de Wael) [183](https://github.com/MICA-MNI/BrainStat/pull/183)

Commits
- 0731d88: [FIX] Fix requires (169) (Reinder Vos de Wael) [169](https://github.com/MICA-MNI/BrainStat/pull/169)
- efe5b59: Fix requires (170) (Reinder Vos de Wael) [170](https://github.com/MICA-MNI/BrainStat/pull/170)

Commits
- b607d31: fix requires (167) (Reinder Vos de Wael) [167](https://github.com/MICA-MNI/BrainStat/pull/167)

Commits
- 0a8c280: bump version (164) (Reinder Vos de Wael) [164](https://github.com/MICA-MNI/BrainStat/pull/164)
- ad4a369: [REF] Fix Python requires, bump version (165) (Reinder Vos de Wael) [165](https://github.com/MICA-MNI/BrainStat/pull/165)
- 69222e3: [FIX] fix python_requires, version bump (166) (Reinder Vos de Wael) [166](https://github.com/MICA-MNI/BrainStat/pull/166)

Commits
- 8da1d07: [TST] Added random_field_theory test generation. (Reinder Vos de Wael)
- f97f3c5: Revert "[TST] Added random_field_theory test generation." (Reinder Vos de Wael)
- 0467c35: Update python_coverage.yml (135) (Reinder Vos de Wael) [135](https://github.com/MICA-MNI/BrainStat/pull/135)
- f6a9dc3: [FIX] Matlab linear model fix (124) (Reinder Vos de Wael) [124](https://github.com/MICA-MNI/BrainStat/pull/124)
- 23447c4: Datagen mesh edges (131) (Şeyma Bayrak) [131](https://github.com/MICA-MNI/BrainStat/pull/131)
- f34ffa0: [TST] data generation for random_field_theory (134) (Reinder Vos de Wael) [134](https://github.com/MICA-MNI/BrainStat/pull/134)
- c3d631c: [GIT] Update CI triggers. (141) (Reinder Vos de Wael) [141](https://github.com/MICA-MNI/BrainStat/pull/141)
- fd8b200: [REF] Updates context.genetics function (140) (Ross Markello) [140](https://github.com/MICA-MNI/BrainStat/pull/140)
- 912b238: [REF] Replaces numpy_groupies with np.bincount (142) (Reinder Vos de Wael) [142](https://github.com/MICA-MNI/BrainStat/pull/142)
- c5e4a3f: [ENH] Added a tutorial dataset fetcher (144) (Reinder Vos de Wael) [144](https://github.com/MICA-MNI/BrainStat/pull/144)
- 2bc713c: [TST] Datagen fdr (132) (Şeyma Bayrak) [132](https://github.com/MICA-MNI/BrainStat/pull/132)
- f282336: [REF, DOC] Cleaning up / Documentation (125) (Reinder Vos de Wael) [125](https://github.com/MICA-MNI/BrainStat/pull/125)
- a152512: [FIX] Set sphinx==3.5.4 - 4.0.0 results in errors. (146) (Reinder Vos de Wael) [146](https://github.com/MICA-MNI/BrainStat/pull/146)
- dc08365: [ENH, FIX] Added tutorial 1. (145) (Reinder Vos de Wael) [145](https://github.com/MICA-MNI/BrainStat/pull/145)
- d1e572e: [REF] Change term/random for FixedEffect/MixedEffect (143) (Reinder Vos de Wael) [143](https://github.com/MICA-MNI/BrainStat/pull/143)
- 2a3ecd0: Datagen smoo (149) (Şeyma Bayrak) [149](https://github.com/MICA-MNI/BrainStat/pull/149)
- cc199bc: [ENH, DOC] Context decoding tutorial (148) (Reinder Vos de Wael) [148](https://github.com/MICA-MNI/BrainStat/pull/148)
- ddfc0de: [TST] Datagen peak clus (136) (Şeyma Bayrak) [136](https://github.com/MICA-MNI/BrainStat/pull/136)
- 5d93dd6: [TST] Datagen resels (147) (Şeyma Bayrak) [147](https://github.com/MICA-MNI/BrainStat/pull/147)
- 48c4467: [TST] Datagen f (152) (Şeyma Bayrak) [152](https://github.com/MICA-MNI/BrainStat/pull/152)
- 8091f08: [TST] Datagen ttest (155) (Şeyma Bayrak) [155](https://github.com/MICA-MNI/BrainStat/pull/155)
- 39026bc: Datagen stat threshold (154) (Şeyma Bayrak) [154](https://github.com/MICA-MNI/BrainStat/pull/154)
- e6f0379: [TST] Datagen mesh normalize (153) (Şeyma Bayrak) [153](https://github.com/MICA-MNI/BrainStat/pull/153)
- c28d8a0: [DOC, ENH] MPC context decoding (157) (Reinder Vos de Wael) [157](https://github.com/MICA-MNI/BrainStat/pull/157)
- 9a877ff: [TST] Add URL test for histology (160) (Reinder Vos de Wael) [160](https://github.com/MICA-MNI/BrainStat/pull/160)
- 6fbfd31: [FIX] Fix readthedocs (161) (Reinder Vos de Wael) [161](https://github.com/MICA-MNI/BrainStat/pull/161)
- 66eb83c: [TST] MATLAB now uses new test files (162) (Reinder Vos de Wael) [162](https://github.com/MICA-MNI/BrainStat/pull/162)
- d7a4f4a: bump version (Reinder Vos de Wael) [164](https://github.com/MICA-MNI/BrainStat/pull/164)

Commits
- [[202faa1](https://github.com/MICA-MNI/BrainStat/commit/202faa1a52febee545c401840d824a7c3aa4622b)]: test data for linear models generated (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[c469c38](https://github.com/MICA-MNI/BrainStat/commit/c469c3857f0888036b79c748a82ed52ec4f847cd)]: initial test data generator coupled with test_linear_model.py (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[09affaa](https://github.com/MICA-MNI/BrainStat/commit/09affaa6d1ef98eb3a11e533277eff8e989289b3)]: data dir is called from .testutils (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[6ddf6b4](https://github.com/MICA-MNI/BrainStat/commit/6ddf6b4f38b4948e015288e981c458569b50c398)]: flake8 style correction (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[07d7e2a](https://github.com/MICA-MNI/BrainStat/commit/07d7e2a264ac596826d56339afa24e9761a7c57b)]: add file thickness_n10.h5 (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[103ad76](https://github.com/MICA-MNI/BrainStat/commit/103ad76524bc4ddd84d6fc6be4f99f9efcf98871)]: try adding h5py requirement for CI checks (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[4525106](https://github.com/MICA-MNI/BrainStat/commit/4525106bf200dd2dc80d953b3ee1382fb7cd4cbe)]: remove h5py dependency (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[3a36a29](https://github.com/MICA-MNI/BrainStat/commit/3a36a297d104a410bd634f0d46290676853e9b2b)]: remove thickness_n10.h5 (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[b038650](https://github.com/MICA-MNI/BrainStat/commit/b038650b17c3bfef0fc2e2afb5a01ee782a7bc99)]: h5py replaced with pickle, 2 functions added for random data generation and output pickle file save (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[a3ca5e0](https://github.com/MICA-MNI/BrainStat/commit/a3ca5e0a5524ec886a4ce5484d0513c2737f2b84)]: h5py replaced with pickle (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[bfb271c](https://github.com/MICA-MNI/BrainStat/commit/bfb271c58feec9e174b2bfb489de310be595b895)]: styling.. (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[7d93b64](https://github.com/MICA-MNI/BrainStat/commit/7d93b64cb2b5227817391be1334ec879fdb15482)]: temporary edits: comment out extern repo (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[184b03f](https://github.com/MICA-MNI/BrainStat/commit/184b03faf878dd87a3d884cfccab16bb5e4bda88)]: styling, v2 (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[5a66b5e](https://github.com/MICA-MNI/BrainStat/commit/5a66b5e325692c90777e74cb75e9562325e8ee3d)]: tmp (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[6351a38](https://github.com/MICA-MNI/BrainStat/commit/6351a38fb6c1d4c85c4101fc7ff241b3aff339d6)]: styling 3.. (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[11cab0d](https://github.com/MICA-MNI/BrainStat/commit/11cab0d9e94d04bf739ca8313cce9a0d871497d6)]: styling 4.. (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[2e6ad40](https://github.com/MICA-MNI/BrainStat/commit/2e6ad40231f923bb4b961488f9fc15371133e943)]: uncouple data generation from test itself, removing cache file (Şeyma Bayrak) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[fbc8c56](https://github.com/MICA-MNI/BrainStat/commit/fbc8c5674090c422b5dc40f60a554f26ddf6e757)]: Merge branch 'master' into datagen_black (Reinder Vos de Wael) [#115](https://github.com/MICA-MNI/BrainStat/pull/115)
- [[658423a](https://github.com/MICA-MNI/BrainStat/commit/658423a188ce702694349f9c34b13fe518d1c0e1)]: [ENH] First stage of SLM class (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[5788cec](https://github.com/MICA-MNI/BrainStat/commit/5788cecbf56e4d540ad310536b3d1b220b21a455)]: [ENH] Added (untested) t_test and linear_model (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[0c1ae7d](https://github.com/MICA-MNI/BrainStat/commit/0c1ae7dbf71cdf8569ee7e71ec82f148b2335511)]: [ENH] Added apply/undo mask. (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[e567f3c](https://github.com/MICA-MNI/BrainStat/commit/e567f3c7d02ddacee227d27025025a6978281423)]: [TST] Brainstat_utils unit tests (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[e360f78](https://github.com/MICA-MNI/BrainStat/commit/e360f7875784135463d7bf6dddbab1c10fff7df5)]: [FIX] Fixed test_utils (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[82cba95](https://github.com/MICA-MNI/BrainStat/commit/82cba95356ab17d1aea75fbb2957a3893166a50c)]: [FIX] Fix undo mask (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[a4aca98](https://github.com/MICA-MNI/BrainStat/commit/a4aca982a6f7cef6e3ac61198f5b613fdb174f6c)]: [FIX] Fix mask funcs (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[8c853f5](https://github.com/MICA-MNI/BrainStat/commit/8c853f58099949d942c252fc5d3581ce7ad8ece1)]: [FIX] Fixed apply and undo mask. (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[64b6939](https://github.com/MICA-MNI/BrainStat/commit/64b6939513b991f43fc3afe1357a08ab7b473822)]: [ENH] SLM linear_model implemented (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[07bde1f](https://github.com/MICA-MNI/BrainStat/commit/07bde1f38db41c0b3013559404a538bb1802b1df)]: [ENH] t-test operational (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[db643ec](https://github.com/MICA-MNI/BrainStat/commit/db643ece747aaca0ee7e357d105b2551a19b7ec4)]: [ENH] Added fdr and resels (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[021cd30](https://github.com/MICA-MNI/BrainStat/commit/021cd3088eed9ee65fc5cd797b60539b3664e786)]: [ENH] Added random field theory (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[069a6c6](https://github.com/MICA-MNI/BrainStat/commit/069a6c653d03a89502a506fd62da0aedcfa936e2)]: [ENH] Added peak_clus (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[092bcb8](https://github.com/MICA-MNI/BrainStat/commit/092bcb8c0010876744df5629804cf3db3f70fd59)]: [ENH] Added f-test (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[1e90684](https://github.com/MICA-MNI/BrainStat/commit/1e90684884592fb6a1f40b5cbdf799ac9311e5bf)]: [TST] Added a basic SLM test (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[7c1e32d](https://github.com/MICA-MNI/BrainStat/commit/7c1e32db70eeacf9fcdcab14f303e8667b98daab)]: [FIX] Fixed temporary SLM test (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[fb54a2d](https://github.com/MICA-MNI/BrainStat/commit/fb54a2debe32ada4ebacad4531e8e553f36097f4)]: Merge branch 'master' into matlab_slm (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[1737fa5](https://github.com/MICA-MNI/BrainStat/commit/1737fa5b7623ec7fde7ae4e8029257cc5af954d3)]: Merge branch 'master' into matlab_slm (Reinder Vos de Wael) [#112](https://github.com/MICA-MNI/BrainStat/pull/112)
- [[b384352](https://github.com/MICA-MNI/BrainStat/commit/b38435295fe9267da51c0133e020efb70715e59b)]: Merge branch 'master' into datagen (Reinder Vos de Wael) [#110](https://github.com/MICA-MNI/BrainStat/pull/110)
- [[39dac94](https://github.com/MICA-MNI/BrainStat/commit/39dac942edb08cd92f06c1b350b5732e9e07c4eb)]: docs polished in brainstat/mesh/data.py (#126) (Şeyma Bayrak) [126](https://github.com/MICA-MNI/BrainStat/pull/126)
- [[d03bf35](https://github.com/MICA-MNI/BrainStat/commit/d03bf35e5e135607933fc07ac814c73d34018d84)]: [REF] Standardize Python/MATLAB nomenclature (#120) (Reinder Vos de Wael) [120](https://github.com/MICA-MNI/BrainStat/pull/120)
- [[db31dd9](https://github.com/MICA-MNI/BrainStat/commit/db31dd964aa853a5d4aa9639b9cc95fd51682b4a)]: [FIX] CI now works on forks (#128) (129) (Reinder Vos de Wael) [129](https://github.com/MICA-MNI/BrainStat/pull/129)
- [[e090d9e](https://github.com/MICA-MNI/BrainStat/commit/e090d9e40b558d884be85fb82a73f228008aa600)]: [DOC] Updated the installation guide. (#122) (Reinder Vos de Wael) [122](https://github.com/MICA-MNI/BrainStat/pull/122)
- [[2166217](https://github.com/MICA-MNI/BrainStat/commit/21662177b27554b385b110f4de63959c5f5fb5d5)]: [FIX] Fixed installation dependencies (#133) (Reinder Vos de Wael) [133](https://github.com/MICA-MNI/BrainStat/pull/133)