Candig-server

Latest version: v1.4.0

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0.9.3

Not secure
This release introduces

- Refactored certain import statements so that it works with the refactored candig-schemas package
- Added a `removePeers` cli command so that peers can be cleared at once
- A better formatted access list, defined in `tsv` format.
- Removed candig-client from the `requirements.txt` as it is not used anywhere in the codebase. It is however being imported in the test suite and thus is now specified in the `dev-requirements.txt`
- MISC updates on the dashboard.

0.9.2

V0.9.2 release of the candig-server.

This release introduces a number of updates:

- The package used for ingestion has been switched to candig-ingest from PROFYLE_ingest.
- Jinja2 package has been updated to resolve security vulnerability issues.
- Package name has been renamed throughout the package.
- Dashboard has been updated so the server status graph can be rendered at all time.
- New commands for server's starting, ingesting and status checking have been added.

Deprecating:
- Server commands, including `ga4gh_server`,`ga4gh_repo` and `ga4gh_configtest`, please use `candig_server`, `candig_repo`, and `candig_configtest` instead.

0.9.1

0.9.1 release of the candig-server.

This release includes a number of enhancements compared to the previous release.

Enhancements:
- Attributes are now properly ingested for the metadata tables, with their Tiers being properly read. This allows individual tables to store data that are not defined in the schemas, with the proper access control retained.
- Improved logicHandler.
- Styling update on dashboard
- Improved documentation, now including sample queries for all clinical, pipeline and complex search endpoints. These sample queries are more tailored to users' need, and would give them a jump-start.

0.9.0

0.9.0 release of the candig-server.

Compared to the previous release of candig-server (previously named as ga4gh-server), this release includes a number of enhancements:

- Data federation.
- Enhanced backend APIs, which includes a number of endpoints written for the newly-added tables; improvements on the existing endpoints (e.g.,: `variants/search` now supports searching variants across multiple variantsets) as well as the complex search (`/search`, and `/count`).
- Better error handling for API requests and responses.
- A dashboard that provides informational overview, clinical, pipeline and genomic (with a custom version of igv.js) data visualization.
- Improved documentation, including a swagger doc.
- Enhanced security through a refined data access control mechanism.
- Support for differential privacy.
- Updates for various python packages, including updating `Flask` to 1.0 from 0.10.
- Updates in application configs and logic to allow for seamless connection to several applications, including Tyk, Keycloak and Gunicorn.
- Additional unit tests on various API endpoints and functionalities for continuous deployment.

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